ViewGene
Locus Name:
GeneID:
Location:

GeneID:420
TrivialName: PA14_73370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73370
PAO1 Ortholog Locus:PA5565
Sequence Length:1893
Protein Length:630
Start: 6532453
Stop: 6530561
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08950.1|AE004968_4 (AE004968) glucose-inhibited division protein A [Pseudomonas aeruginosa PAO1]
Identities = 628/630 (99%), Positives = 630/630 (100%)
Sequence:
GTGGATTTCCCTACCCGTTTTGACGTAATCGTGATCGGCGGTGGCCATGCAGGCACCGAAGCCGCACTCGCG
GCTGCGCGCATGGGTGTGAAAACCCTGCTGTTGACCCACAATGTGGAAACCCTGGGGCAGATGAGCTGCAAC
CCCGCCATCGGCGGCATCGGCAAGAGCCATCTGGTCAAGGAAATCGACGCCCTTGGCGGCGCCATGGCCGAA
GCCACCGACAAGGGCGGTATCCAGTTCCGCATCCTTAACAGCCGCAAGGGGCCGGCAGTGCGCGCCACTCGT
GCACAAGCCGATCGCGTGCTCTATAAGGCCGCTATCCGCCATACACTGGAAAACCAGCCGAACCTGTGGATA
TTCCAGCAGGCCTGCGACGACCTGATCGTCGAGCAGGATCAGGTCCGCGGCGTAGTGACCCAGATGGGACTG
CGCTTCCATGCCGACAACGTGGTCCTGACTACCGGCACCTTCCTCGGCGGACTTATCCACATCGGCCTGGAG
AACTACTCCGGCGGACGCGCCGGCGACCCGCCGTCCATCGCACTGGCGCGGCGTCTGCGTGAATTGCCGCTG
CGGGTCGGCCGGCTGAAGACCGGTACGCCGCCGCGGATCGACGGGCGCAGCGTGGACTTCTCGGTGATGACC
GAGCAGCCGGGCGACACGCCGATCCCGGTGATGTCCTTCCTCGGTTCGAAGGAACAGCATCCCGAGCAGGTC
AGTTGCTGGATCACCCATACCAACGCCCGGACCCACGAGATCATCGCCGCCAATCTCGATCGTTCGCCGATG
TATTCCGGTGTGATCGAAGGCATCGGCCCGCGCTACTGCCCTTCGATCGAAGACAAGATCCATCGCTTCGCC
GACAAGGAAAGCCACCAGGTCTTCCTCGAGCCGGAAGGCCTGACGACCCACGAGCTGTATCCCAACGGCATT
TCCACGTCCCTGCCGTTCGACGTGCAACTGCAGATCGTGCGTTCCATCCGTGGCATGGAAAACGCCCACATC
GTGCGGCCGGGCTATGCGATCGAGTACGACTTCTTCGATCCTCGCGATCTCAGGTACAGCCTGGAGACCAAG
GTCATCGGCGGCCTGTTCTTCGCCGGCCAGATCAACGGCACCACCGGCTACGAGGAAGCTGGCGCCCAGGGC
CTGCTGGCCGGCGCCAATGCTGCGTTGCGTTCGCAAGGCAAGGACAGCTGGTGCCCGCGCCGCGACGAGGCC
TACATCGGCGTGCTGGTGGACGACCTGATCACGCTCGGCACCCAGGAGCCGTACCGCATGTTCACCTCGCGG
GCGGAATACCGCCTGATCCTCCGCGAGGACAACGCCGACCTGCGTCTCACCGAGAAGGGACGCGAGCTGGGC
CTTGTCGACGATCGGCGCTGGGCTGCCTTCGAAGCCAAGCGCGAAGGTATCGAACGCGAGGAACAGCGGCTG
AAGAGCACCTGGGTGCGGCCGAATACCCCGCAGGGCGACGCCATCGCCGAGCGCTTCGGTACGCCGCTGACC
CATGAATACAACCTGCTCAACCTGCTGAGCCGCCCCGAGATCGATTACGCCGGCCTGGTGGAGATCACCGGC
GACGCTGTGGATAACCCCCAGGTGGCCGAGCAGGTGGAGATTCGCACCAAGTACGCCGGCTACATCGACCGC
CAGCAGGAGGAAATCGCCCGGCTGCGCGCCAGCGAAGATACCCGCCTGCCTGTGGATATCGATTACCTGGGG
ATTTCCGGCCTGTCGAAGGAAATCCAGAACAAGCTGAACCAGGCCCGTCCGGAAACCCTCGGACAGGCTTCG
CGAATCCCCGGCGTCACGCCGGCTGCGATTTCGCTGTTGTTGATCCACCTGAAGAAGCGTGCCTCTGGCCGC
CAACTGGAGCAGAGCGCTTGA
Translation:
MDFPTRFDVIVIGGGHAGTEAALAAARMGVKTLLLTHNVETLGQMSCNPAIGGIGKSHLVKEIDALGGAMAE
ATDKGGIQFRILNSRKGPAVRATRAQADRVLYKAAIRHTLENQPNLWIFQQACDDLIVEQDQVRGVVTQMGL
RFHADNVVLTTGTFLGGLIHIGLENYSGGRAGDPPSIALARRLRELPLRVGRLKTGTPPRIDGRSVDFSVMT
EQPGDTPIPVMSFLGSKEQHPEQVSCWITHTNARTHEIIAANLDRSPMYSGVIEGIGPRYCPSIEDKIHRFA
DKESHQVFLEPEGLTTHELYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDFFDPRDLRYSLETK
VIGGLFFAGQINGTTGYEEAGAQGLLAGANAALRSQGKDSWCPRRDEAYIGVLVDDLITLGTQEPYRMFTSR
AEYRLILREDNADLRLTEKGRELGLVDDRRWAAFEAKREGIEREEQRLKSTWVRPNTPQGDAIAERFGTPLT
HEYNLLNLLSRPEIDYAGLVEITGDAVDNPQVAEQVEIRTKYAGYIDRQQEEIARLRASEDTRLPVDIDYLG
ISGLSKEIQNKLNQARPETLGQASRIPGVTPAAISLLLIHLKKRASGRQLEQSA*
AnnotationID:429GeneID:420
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 09:09:00
Gene Name:gidA
Confidence Code:2
GeneProduct:glucose-inhibited division protein A
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0445,pfam01134
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO59023.1| (AE016876) glucose-inhibited division protein A [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 630

 Score = 1154 bits (2984), Expect = 0.0
 Identities = 576/630 (91%), Positives = 599/630 (95%)

>gb|AAN65638.1|AE016190_4 (AE016774) glucose-inhibited division protein A [Pseudomonas putida
           KT2440]
          Length = 631

 Score = 1147 bits (2966), Expect = 0.0
 Identities = 562/630 (89%), Positives = 602/630 (95%)

>gb|AAN57717.1|AE015908_2 (AE015908) glucose-inhibited division protein A [Shewanella
           oneidensis MR-1]
          Length = 629

 Score =  931 bits (2407), Expect = 0.0
 Identities = 461/622 (74%), Positives = 522/622 (83%), Gaps = 2/622 (0%)








 
Structural Features:
COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in cell division 
[Cell division and chromosome partitioning]
CD-Length = 621 residues, 100.0% aligned
Score = 1003 bits (2596), Expect = 0.0
Identities = 417/624 (66%), Positives = 484/624 (77%), Gaps = 5/624 (0%)

pfam01134, GIDA, Glucose inhibited division protein A.
CD-Length = 399 residues, 100.0% aligned
Score =  600 bits (1548), Expect = 2e-172
Identities = 262/399 (65%), Positives = 302/399 (75%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14133




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17985




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33348




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:420_cdd.html


    		




 
URL:

















    ReferenceID:35546




  
Author/Investigator(s):
        Clark MA, Baumann L, Baumann P.





  
Title:
        Sequence analysis of a 34.7-kb DNA segment from the genome of Buchnera aphidicola (endosymbiont of aphids) containing groEL, dnaA, the atp operon, gidA, and rho.




  
PubMed:
        9516544


MedLine:
        




    
Source:
Curr Microbiol. 1998 Mar;36(3):158-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9516544

















    ReferenceID:35564




  
Author/Investigator(s):
        Nardmann J, Messer W.





  
Title:
        Identification and characterization of the dnaA upstream region of Thermus thermophilus.




  
PubMed:
        11167017


MedLine:
        




    
Source:
Gene. 2000 Dec 31;261(2):299-303.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11167017









           
Homologs By Global Alignment 

           

       



     
Gene ID:420
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
710
                           PA5565_tr
                           translation of PA5565
                           630
                           99.68
                           99.99
                           0
                           3241.0
     

     
     
31803
                           gb|AAG08950.1|AE004968_4
                           (AE004968) glucose-inhibited division protein A [Pseudomonas aeruginosa PAO1]
                           630
                           99.52
                           99.99
                           0
                           3238.0
     

     
     
31804
                           gb|AAG22815.1|AF302083_1
                           (AF302083) GidA [Pseudomonas syringae] [Pseudomonas syringae pv. syringae]
                           631
                           91.44
                           95.40
                           1
                           3003.0
     

     
     
31805
                           gb|AAO59023.1|
                           (AE016876) glucose-inhibited division protein A [Pseudomonas syringae pv. tomato str. DC3000]
                           630
                           91.26
                           95.07
                           0
                           2980.0
     

     
     
31806
                           gb|AAN65638.1|AE016190_4
                           (AE016774) glucose-inhibited division protein A [Pseudomonas putida KT2440]
                           631
                           89.22
                           95.40
                           1
                           2969.0
     

     






      

          
GC ORFID: 43422How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5565Glimmer Score: 

          
Start: 5796142Stop: 5794250

          
Length: 1893


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5565 translation of PA5565Homolog Bit Score 1253.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4121 (ORF: BLASTX 1161.0), t_PA5565 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGATTTCCCTACCCGTTTTGACGTAATCGTGATCGGCGGTGGCCATGCAGGCACCGAAGCCGCACTCGCG 
GCTGCGCGCATGGGTGTGAAAACCCTGCTGTTGACCCACAATGTGGAAACCCTGGGGCAGATGAGCTGCAAC 
CCCGCCATCGGCGGCATCGGCAAGAGCCATCTGGTCAAGGAAATCGACGCCCTTGGCGGCGCCATGGCCGAA 
GCCACCGACAAGGGCGGTATCCAGTTCCGCATCCTTAACAGCCGCAAGGGGCCGGCAGTGCGCGCCACTCGT 
GCACAAGCCGATCGCGTGCTCTATAAGGCCGCTATCCGCCATACACTGGAAAACCAGCCGAACCTGTGGATA 
TTCCAGCAGGCCTGCGACGACCTGATCGTCGAGCAGGATCAGGTCCGCGGCGTAGTGACCCAGATGGGACTG 
CGCTTCCATGCCGACAACGTGGTCCTGACTACCGGCACCTTCCTCGGCGGACTTATCCACATCGGCCTGGAG 
AACTACTCCGGCGGACGCGCCGGCGACCCGCCGTCCATCGCACTGGCGCGGCGTCTGCGTGAATTGCCGCTG 
CGGGTCGGCCGGCTGAAGACCGGTACGCCGCCGCGGATCGACGGGCGCAGCGTGGACTTCTCGGTGATGACC 
GAGCAGCCGGGCGACACGCCGATCCCGGTGATGTCCTTCCTCGGTTCGAAGGAACAGCATCCCGAGCAGGTC 
AGTTGCTGGATCACCCATACCAACGCCCGGACCCACGAGATCATCGCCGCCAATCTCGATCGTTCGCCGATG 
TATTCCGGTGTGATCGAAGGCATCGGCCCGCGCTACTGCCCTTCGATCGAAGACAAGATCCATCGCTTCGCC 
GACAAGGAAAGCCACCAGGTCTTCCTCGAGCCGGAAGGCCTGACGACCCACGAGCTGTATCCCAACGGCATT 
TCCACGTCCCTGCCGTTCGACGTGCAACTGCAGATCGTGCGTTCCATCCGTGGCATGGAAAACGCCCACATC 
GTGCGGCCGGGCTATGCGATCGAGTACGACTTCTTCGATCCTCGCGATCTCAGGTACAGCCTGGAGACCAAG 
GTCATCGGCGGCCTGTTCTTCGCCGGCCAGATCAACGGCACCACCGGCTACGAGGAAGCTGGCGCCCAGGGC 
CTGCTGGCCGGCGCCAATGCTGCGTTGCGTTCGCAAGGCAAGGACAGCTGGTGCCCGCGCCGCGACGAGGCC 
TACATCGGCGTGCTGGTGGACGACCTGATCACGCTCGGCACCCAGGAGCCGTACCGCATGTTCACCTCGCGG 
GCGGAATACCGCCTGATCCTCCGCGAGGACAACGCCGACCTGCGTCTCACCGAGAAGGGACGCGAGCTGGGC 
CTTGTCGACGATCGGCGCTGGGCTGCCTTCGAAGCCAAGCGCGAAGGTATCGAACGCGAGGAACAGCGGCTG 
AAGAGCACCTGGGTGCGGCCGAATACCCCGCAGGGCGACGCCATCGCCGAGCGCTTCGGTACGCCGCTGACC 
CATGAATACAACCTGCTCAACCTGCTGAGCCGCCCCGAGATCGATTACGCCGGCCTGGTGGAGATCACCGGC 
GACGCTGTGGATAACCCCCAGGTGGCCGAGCAGGTGGAGATTCGCACCAAGTACGCCGGCTACATCGACCGC 
CAGCAGGAGGAAATCGCCCGGCTGCGCGCCAGCGAAGATACCCGCCTGCCTGTGGATATCGATTACCTGGGG 
ATTTCCGGCCTGTCGAAGGAAATCCAGAACAAGCTGAACCAGGCCCGTCCGGAAACCCTCGGACAGGCTTCG 
CGAATCCCCGGCGTCACGCCGGCTGCGATTTCGCTGTTGTTGATCCACCTGAAGAAGCGTGCCTCTGGCCGC 
CAACTGGAGCAGAGCGCTTGA