ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4199

TrivialName: PA14_06680

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_06680

PAO1 Ortholog Locus: PA0512

Sequence Length: 516

Protein Length: 171

Start: 585082

Stop: 584567

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03901.1|AE004488_5 (AE004488) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 171/171 (100%), Positives = 171/171 (100%)

Sequence:

ATGTCGGCCTGCATTTCCCCCTCTGACGCCCTGCTCGCCCGCCGCCTGATCGAACTGACCCAGGCCGGCCTG
CCGCTGGTCGCCGACCCTTGGGCGTGGATCGCCGCGCAACTGCGGCTGAGCGAGGCGGAGACCCTGGCGCTG
CTGAAGCGCCTGCGCGACGCCGGGGTGATCCGGCGCATCGCTGCGGTGCCCAACCACTATCGCCTTGGCTAC
CGGCACAACGGCATGACCGTCTGGGACGTCGCCGACGAACGCATCGAACGCCTCGGCCGGCTGGTCGGCGGG
CTGTCCTTCGTCAGCCATTGCTACCGGCGCCCGCGCCATCTGCCGCAGTGGCGCTACAACCTGTTCGCCATG
GTCCACGGCCGCAGCGAAGCGGAGATCGAAGGCTACCGCCAGCAGATCCGCCTGCTGCTCGGCGAGGACTGT
CGCGCCGACGAGATGCTGGTGAGCAGCCGCATCCTGAAGAAGACCGGCCTGCGCCTGGCGCAGAAGGAGGAA
CGTCCATGCTGA

Translation:

MSACISPSDALLARRLIELTQAGLPLVADPWAWIAAQLRLSEAETLALLKRLRDAGVIRRIAAVPNHYRLGY
RHNGMTVWDVADERIERLGRLVGGLSFVSHCYRRPRHLPQWRYNLFAMVHGRSEAEIEGYRQQIRLLLGEDC
RADEMLVSSRILKKTGLRLAQKEERPC*

AnnotationID:4206 GeneID:4199

AnnotatorUID: diggins

Modification Date/Time: 2005-05-08 15:03:54

Gene Name: nirH

Confidence Code: 2

GeneProduct: heme d1 biosynthesis protein NirH

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (12) Energy metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies): biosynthesis of cofactors, prosthetic groups and carriers

EC Number:

Status: ACTIVE

Pathway:

Homology:

>emb|CAA90582.1| (Z50198) NirH protein [Pseudomonas stutzeri]
          Length = 168

 Score =  237 bits (604), Expect = 3e-62
 Identities = 117/164 (71%), Positives = 131/164 (79%), Gaps = 1/164 (0%)

>gb|AAG20000.1| (AE005081) heme biosynthesis protein; NirH [Halobacterium sp.
           NRC-1]
          Length = 352

 Score =  146 bits (369), Expect = 5e-35
 Identities = 71/159 (44%), Positives = 103/159 (64%), Gaps = 4/159 (2%)

Structural Features:

Genomic Context:

Comment:

ReferenceID:8400

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25541

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33820

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4199_cdd.html

URL:

ReferenceID:35305

Author/Investigator(s): Kawasaki S, Arai H, Kodama T, Igarashi Y.

Title: Gene cluster for dissimilatory nitrite reductase (nir) from Pseudomonas aeruginosa: sequencing and identification of a locus for heme d1 biosynthesis.

PubMed: 8982003

MedLine:

Source:

J Bacteriol. 1997 Jan;179(1):235-42.

Reference Type: Journal

Data:

URL:	`http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8982003`

Homologs By Global Alignment

Gene ID:4199

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6481 PA0512_tr translation of PA0512 171 99.99 99.99 0 887.0

176542 gb|AAG03901.1|AE004488_5 (AE004488) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 171 99.99 99.99 0 887.0

176543 dbj|BAA12680.1| (D84475) NirH [Pseudomonas aeruginosa] 171 99.99 99.99 0 887.0

176544 emb|CAA90582.1| (Z50198) NirH protein [Pseudomonas stutzeri] 171 68.42 77.19 3 602.0

6482 PA0514_tr translation of PA0514 181 35.91 49.72 17 259.0

GC ORFID: `47201`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0512`	Glimmer Score:
Start: `6386424`	Stop: `6385909`
Length: `516`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0512 translation of PA0512`	Homolog Bit Score `346.0`
Other Homologs: `t_PA0514 (ORF: BLASTX 104.0), t_PA0512 (ORF: GLIMMER)`
GC ORF Sequence
ATGTCGGCCTGCATTTCCCCCTCTGACGCCCTGCTCGCCCGCCGCCTGATCGAACTGACCCAGGCCGGCCTG CCGCTGGTCGCCGACCCTTGGGCGTGGATCGCCGCGCAACTGCGGCTGAGCGAGGCGGAGACCCTGGCGCTG CTGAAGCGCCTGCGCGACGCCGGGGTGATCCGGCGCATCGCTGCGGTGCCCAACCACTATCGCCTTGGCTAC CGGCACAACGGCATGACCGTCTGGGACGTCGCCGACGAACGCATCGAACGCCTCGGCCGGCTGGTCGGCGGG CTGTCCTTCGTCAGCCATTGCTACCGGCGCCCGCGCCATCTGCCGCAGTGGCGCTACAACCTGTTCGCCATG GTCCACGGCCGCAGCGAAGCGGAGATCGAAGGCTACCGCCAGCAGATCCGCCTGCTGCTCGGCGAGGACTGT CGCGCCGACGAGATGCTGGTGAGCAGCCGCATCCTGAAGAAGACCGGCCTGCGCCTGGCGCAGAAGGAGGAA CGTCCATGCTGA