ViewGene
Locus Name:
GeneID:
Location:

GeneID:4198
TrivialName: PA14_15840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15840
PAO1 Ortholog Locus:PA3756
Sequence Length:501
Protein Length:166
Start: 1351339
Stop: 1350839
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07143.1|AE004794_8 (AE004794) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 166/166 (100%), Positives = 166/166 (100%)
Sequence:
ATGCGCTGGTTGCTTGCTTTGCTGTGCTTGACCTTCGCCAGTCTGACCCAGGCCAATGCCGCGCCGAGCCTG
GAAGGCAAGGTGGACAAGGTCCtGGTGCTCAAGTCCGAGCGAAAACTGCTGCTCCTCAACAAAGGCAACGTC
CTGAAAAGCTACCGTGTCTCGCTGGGCAAGCGCCCGACCGGCCCGAAGCTGGCCGAAGGCGACAACCGCACC
CCGGAAGGCTTCTACTGGATCGACTGGCGCAAGACCAGCAACAACTACAACCTCTCCATGCACATTTCCTAC
CCCAACGCCCGCGACGTGGCCAAGGCCCGGGAAAAGGGCCTGCCGGCCGGTGGCATGATCATGATCCACGGC
ACCCCGCTGGATGACGAATACCCGGAGTGGTACTTCTCCACCCTGGACTGGACCAATGGCTGTATCGCCATG
AACAATACCGACATGCGCGAAGTCTGGAGCGTGGTGAAAGACGGCACGCTGATCGAGATCCGCCCCTGA
Translation:
MRWLLALLCLTFASLTQANAAPSLEGKVDKVLVLKSERKLLLLNKGNVLKSYRVSLGKRPTGPKLAEGDNRT
PEGFYWIDWRKTSNNYNLSMHISYPNARDVAKAREKGLPAGGMIMIHGTPLDDEYPEWYFSTLDWTNGCIAM
NNTDMREVWSVVKDGTLIEIRP*
AnnotationID:4205GeneID:4198
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 11:11:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3756
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8398




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25539




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31802




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4198_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4198
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6480
                           PA3756_tr
                           translation of PA3756
                           166
                           99.99
                           99.99
                           0
                           887.0
     

     
     
176532
                           gb|AAG07143.1|AE004794_8
                           (AE004794) hypothetical protein PA3756 [Pseudomonas aeruginosa PAO1]
                           166
                           99.99
                           99.99
                           0
                           887.0
     

     
     
176534
                           gb|AAN67073.1|AE016336_5
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           184
                           58.15
                           73.36
                           18
                           589.0
     

     
     
176533
                           gb|AAO54982.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           208
                           55.76
                           64.42
                           42
                           627.0
     

     
     
176536
                           gb|AAN55227.1|AE015660_7
                           (AE015660) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           177
                           46.89
                           61.58
                           17
                           376.0
     

     






      

          
GC ORFID: 47200How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3756Glimmer Score: 

          
Start: 3602598Stop: 3603098

          
Length: 501


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3756 translation of PA3756Homolog Bit Score 346.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4847 (ORF: BLASTX 242.0), t_PA3756 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCTGGTTGCTTGCTTTGCTGTGCTTGACCTTCGCCAGTCTGACCCAGGCCAATGCCGCGCCGAGCCTG 
GAAGGCAAGGTGGACAAGGTCCtGGTGCTCAAGTCCGAGCGAAAACTGCTGCTCCTCAACAAAGGCAACGTC 
CTGAAAAGCTACCGTGTCTCGCTGGGCAAGCGCCCGACCGGCCCGAAGCTGGCCGAAGGCGACAACCGCACC 
CCGGAAGGCTTCTACTGGATCGACTGGCGCAAGACCAGCAACAACTACAACCTCTCCATGCACATTTCCTAC 
CCCAACGCCCGCGACGTGGCCAAGGCCCGGGAAAAGGGCCTGCCGGCCGGTGGCATGATCATGATCCACGGC 
ACCCCGCTGGATGACGAATACCCGGAGTGGTACTTCTCCACCCTGGACTGGACCAATGGCTGTATCGCCATG 
AACAATACCGACATGCGCGAAGTCTGGAGCGTGGTGAAAGACGGCACGCTGATCGAGATCCGCCCCTGA