ViewGene
Locus Name:
GeneID:
Location:

GeneID:4197
TrivialName: PA14_32710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32710
PAO1 Ortholog Locus:PA2468
Sequence Length:519
Protein Length:172
Start: 2840489
Stop: 2841007
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05856.1|AE004674_6 (AE004674) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1]
Identities = 172/172 (100%), Positives = 172/172 (100%)
Sequence:
ATGTCCGCCCCGATCCTTCTCAGCGCCCACCATCGCGCCATGCATGCGCTGTACAGCGAGCACCATGGCTGG
TTGCAGAACTGGTTGCGCGGCAAGCTGGGCTGCGCGGCGGACGCGGCGGACCTGGCCCAGGACACCTTCCTG
CGCATCCTGCTCAAGCGCGAACTGCGCGAGATCGGCATGCCGCGCGCGTTCCTGCGGACCATCGCCCGCGGC
CTGGTGATCGACCACTGGCGTCGCGAGGAACTGCAGCGCGCCTACCTCGAAAGCATCGCCCACTTGCCCGAG
GCACAGGCGCCGTCGCCCGAGGCGCGGGAACTGGTGCTGGAACTGCTGGAGGAAATCTCGCGGATGCTCGAC
GGGCTCAAGCCGAAGGTCCGCACCGCCTTCCTCCTGGCCCAGTGCGAAGACCTCAGCCACCGGCAGATCGCC
GAACGCATGGGGGTTTCCCAGCGTAGCGTCGAGCGCTACGTGGCCGAGGCGCTGTACCACTGCTACCTGCTG
CGCTACGGCGAATGA
Translation:
MSAPILLSAHHRAMHALYSEHHGWLQNWLRGKLGCAADAADLAQDTFLRILLKRELREIGMPRAFLRTIARG
LVIDHWRREELQRAYLESIAHLPEAQAPSPEARELVLELLEEISRMLDGLKPKVRTAFLLAQCEDLSHRQIA
ERMGVSQRSVERYVAEALYHCYLLRYGE*
AnnotationID:4204GeneID:4197
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 17:05:26
Gene Name:
Confidence Code:3
GeneProduct:probable sigma-70 factor, ECF subfamily
Cell Localization:()
Synonyms:PA2468
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8396




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25537




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4197
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6472
                           PA2468_tr
                           translation of PA2468
                           172
                           99.99
                           99.99
                           0
                           887.0
     

     
     
176479
                           gb|AAG05856.1|AE004674_6
                           (AE004674) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1]
                           172
                           99.99
                           99.99
                           0
                           887.0
     

     
     
176480
                           gb|AAN65795.1|AE016207_2
                           (AE016774) RNA polymerase sigma-70 factor, ECF subfamily [Pseudomonas putida KT2440]
                           174
                           67.81
                           81.60
                           3
                           623.0
     

     
     
176487
                           emb|CAE44681.1|
                           (BX640412) heme uptake regulator [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           173
                           54.91
                           67.63
                           5
                           453.0
     

     
     
176486
                           emb|CAE39462.1|
                           (BX640435) heme uptake regulator [Bordetella parapertussis]
                           173
                           54.91
                           67.63
                           5
                           453.0
     

     






      

          
GC ORFID: 47199How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2468Glimmer Score: 

          
Start: 2113435Stop: 2112917

          
Length: 519


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2468 translation of PA2468Homolog Bit Score 346.0

          
Other Homologs:  t_PA3899 (ORF: BLASTX 177.0), t_PA1912 (ORF: BLASTX 170.0), psyr_15may02_Scaffold1_revised_gene1362 (ORF: BLASTX 164.0), psyr_15may02_Scaffold6_revised_gene6627 (ORF: BLASTX 159.0), t_PA0472 (ORF: BLASTX 156.0), psyr_15may02_Scaffold3_revised_gene5013 (ORF: BLASTX 156.0), t_PA2050 (ORF: BLASTX 128.0), t_PA2093 (ORF: BLASTX 125.0), t_PA4896 (ORF: BLASTX 122.0), t_PA1300 (ORF: BLASTX 103.0), t_PA2468 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCCCCGATCCTTCTCAGCGCCCACCATCGCGCCATGCATGCGCTGTACAGCGAGCACCATGGCTGG 
TTGCAGAACTGGTTGCGCGGCAAGCTGGGCTGCGCGGCGGACGCGGCGGACCTGGCCCAGGACACCTTCCTG 
CGCATCCTGCTCAAGCGCGAACTGCGCGAGATCGGCATGCCGCGCGCGTTCCTGCGGACCATCGCCCGCGGC 
CTGGTGATCGACCACTGGCGTCGCGAGGAACTGCAGCGCGCCTACCTCGAAAGCATCGCCCACTTGCCCGAG 
GCACAGGCGCCGTCGCCCGAGGCGCGGGAACTGGTGCTGGAACTGCTGGAGGAAATCTCGCGGATGCTCGAC 
GGGCTCAAGCCGAAGGTCCGCACCGCCTTCCTCCTGGCCCAGTGCGAAGACCTCAGCCACCGGCAGATCGCC 
GAACGCATGGGGGTTTCCCAGCGTAGCGTCGAGCGCTACGTGGCCGAGGCGCTGTACCACTGCTACCTGCTG 
CGCTACGGCGAATGA