ViewGene

Locus Name:
GeneID:
Location:

GeneID:4195
TrivialName: PA14_64520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64520
PAO1 Ortholog Locus:PA4880
Sequence Length:534
Protein Length:177
Start: 5748353
Stop: 5748886
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08265.1|AE004901_7 (AE004901) probable bacterioferritin [Pseudomonas aeruginosa PAO1]
Identities = 176/177 (99%), Positives = 177/177 (100%)
Sequence:
ATGACCACCGTTCAACTGACGGACGTCCAGACCCTTCGCGACCGTGCCCGCAAGAACATCCAGGAAGGCGCG
GTCACCGAAGGCTATTCGGCCGATCGCCAGACCGTCCTGCGCCTGCTCAACGAAGCGCTCGCCACCGAGCTG
GTCTGCTTCCTGCGCTACAAGCGCCACTACTTCATGGCCACCGGCCTGAAGGCGAGCATCGCCGCCGCCGAG
TTCCTCGAGCATGCCAACCAGGAAATGCAGCACGCCGACCAGTTGGCCGAGCGCATCATGCAACTGGGCGGC
GAGCCGGACTTCAATCCGCGCGGCCTGGAGGAGCGCTCCCATGCCGAATACGTCGAAGGCAAGACCCTGAAG
GACATGGTCACCGAGAACCTGATCGCCGAGCGCATCGCCATCGACAGCTATCGCGAGATCATCACCTACCTC
GGTAACGACGACCCCACTAGCCGACGCATCTTCGAGGAAATCCTGGCCCAGGAAGAAGAACACGCGGACGAC
ATGGCCGACATCCTCGACGACCTCGCCTGA
Translation:
MTTVQLTDVQTLRDRARKNIQEGAVTEGYSADRQTVLRLLNEALATELVCFLRYKRHYFMATGLKASIAAAE
FLEHANQEMQHADQLAERIMQLGGEPDFNPRGLEERSHAEYVEGKTLKDMVTENLIAERIAIDSYREIITYL
GNDDPTSRRIFEEILAQEEEHADDMADILDDLA*
AnnotationID:4202GeneID:4195
AnnotatorUID: diggins
Modification Date/Time: 2006-01-20 07:07:07
Gene Name:
Confidence Code:3
GeneProduct:putative bacterioferritin
Cell Localization:()
Synonyms:PA4880
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2193
Secondary Functional Category(ies):inorganic ion transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58334.1| (AE016873) bacterioferritin, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 179

 Score =  271 bits (693), Expect = 1e-72
 Identities = 132/172 (76%), Positives = 155/172 (90%)

>gb|AAN70425.1|AE016684_4 (AE016792) bacterioferritin, putative [Pseudomonas putida KT2440]
          Length = 168

 Score =  259 bits (663), Expect = 4e-69
 Identities = 123/168 (73%), Positives = 152/168 (90%)

>emb|CAE30751.1| (BX640437) bacterioferritin [Bordetella bronchiseptica]
          Length = 189

 Score =  241 bits (615), Expect = 1e-63
 Identities = 118/166 (71%), Positives = 141/166 (84%)

Structural Features:
COG2193, Bfr, Bacterioferritin (cytochrome b1) 
[Inorganic ion transport and metabolism]
CD-Length = 157 residues,  87.9% aligned
Score =  142 bits (360), Expect = 2e-35
Identities = 56/145 (38%), Positives = 74/145 (51%), Gaps = 8/145 (5%)
Genomic Context:
Comment:
ReferenceID:8392
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25533
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35173
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4195_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4195

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6469 PA4880_tr translation of PA4880 177 99.43 99.99 0 890.0
176367 gb|AAG08265.1|AE004901_7 (AE004901) probable bacterioferritin [Pseudomonas aeruginosa PAO1] 177 99.43 99.99 0 890.0
176368 gb|AAO58334.1| (AE016873) bacterioferritin, putative [Pseudomonas syringae pv. tomato str. DC3000] 180 74.44 87.77 4 693.0
176369 gb|AAN70425.1|AE016684_4 (AE016792) bacterioferritin, putative [Pseudomonas putida KT2440] 177 69.49 85.87 9 663.0
176370 emb|CAE30751.1| (BX640437) bacterioferritin [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 193 61.65 74.09 20 608.0
GC ORFID: 47197How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4880Glimmer Score:
Start: 5012034Stop: 5012567
Length: 534
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4880 translation of PA4880Homolog Bit Score 347.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5819 (ORF: BLASTX 278.0), t_PA4880 (ORF: GLIMMER)
GC ORF Sequence
ATGACCACCGTTCAACTGACGGACGTCCAGACCCTTCGCGACCGTGCCCGCAAGAACATCCAGGAAGGCGCG
GTCACCGAAGGCTATTCGGCCGATCGCCAGACCGTCCTGCGCCTGCTCAACGAAGCGCTCGCCACCGAGCTG
GTCTGCTTCCTGCGCTACAAGCGCCACTACTTCATGGCCACCGGCCTGAAGGCGAGCATCGCCGCCGCCGAG
TTCCTCGAGCATGCCAACCAGGAAATGCAGCACGCCGACCAGTTGGCCGAGCGCATCATGCAACTGGGCGGC
GAGCCGGACTTCAATCCGCGCGGCCTGGAGGAGCGCTCCCATGCCGAATACGTCGAAGGCAAGACCCTGAAG
GACATGGTCACCGAGAACCTGATCGCCGAGCGCATCGCCATCGACAGCTATCGCGAGATCATCACCTACCTC
GGTAACGACGACCCCACTAGCCGACGCATCTTCGAGGAAATCCTGGCCCAGGAAGAAGAACACGCGGACGAC
ATGGCCGACATCCTCGACGACCTCGCCTGA