ViewGene

Locus Name:
GeneID:
Location:

GeneID:4194
TrivialName: PA14_22870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22870
PAO1 Ortholog Locus:PA3196
Sequence Length:531
Protein Length:176
Start: 1984681
Stop: 1985211
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06584.1|AE004743_7 (AE004743) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 176/176 (100%), Positives = 176/176 (100%)
Sequence:
ATGAAAGAGACCCTGAACGAACTGATCACCCTCATCAGCACCGGCTGCATGGGCGCCGAGGAGATCCGGCGG
ATCGCCGACGAGGCGGCCCAGGCCTACGCCGATCCGGCAGGGTTCCTCGCCGCCAACCCGGACATCAACTAC
GACGACAGCTTCCCGATCCCGCTCGGCGAGTGGGTGGTGGTCGGTAGCCTGCCGGATATCGTGCTGTTCCAG
GCCGATACCTATGCCGAGCTGTTCGCCCGGATCGTCGCCTCCTTCGGCAAGGACGTGGCGTTCAACATCAAG
CCGAAGCAGTTGCTCAAGACCGAGCCGCTGGTCGCCCTCAACCGTATCCAGGTGCAACTGAGCAGCATGTAT
CCGGAAAAGGGCGGCTACGTGCTGGTGGATTTCAGCGAGCCGCTGGACGACGAGTTGCAGGCGGTGCTGGTC
TATACCCAGGACCTGCCGCGGGTCATGGCGCTCTGCGTCGAGGCCGGCATCTATGCCGCGCCTGCCTACGAA
AGCCTGCGCGACGCCGAGGCCGAGTGA
Translation:
MKETLNELITLISTGCMGAEEIRRIADEAAQAYADPAGFLAANPDINYDDSFPIPLGEWVVVGSLPDIVLFQ
ADTYAELFARIVASFGKDVAFNIKPKQLLKTEPLVALNRIQVQLSSMYPEKGGYVLVDFSEPLDDELQAVLV
YTQDLPRVMALCVEAGIYAAPAYESLRDAEAE*
AnnotationID:4201GeneID:4194
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:45
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3196
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8390
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25531
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4194

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6468 PA3196_tr translation of PA3196 176 99.99 99.99 0 890.0
176364 gb|AAG06584.1|AE004743_7 (AE004743) hypothetical protein PA3196 [Pseudomonas aeruginosa PAO1] 176 99.99 99.99 0 890.0
176365 gb|AAO55570.1| (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 176 71.59 82.95 4 639.0
176366 gb|AAN67454.1|AE016372_9 (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440] 176 64.77 75.00 0 557.0
GC ORFID: 47196How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3196Glimmer Score:
Start: 2969250Stop: 2968720
Length: 531
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3196 translation of PA3196Homolog Bit Score 347.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene864 (ORF: BLASTX 253.0), t_PA3196 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAGAGACCCTGAACGAACTGATCACCCTCATCAGCACCGGCTGCATGGGCGCCGAGGAGATCCGGCGG
ATCGCCGACGAGGCGGCCCAGGCCTACGCCGATCCGGCAGGGTTCCTCGCCGCCAACCCGGACATCAACTAC
GACGACAGCTTCCCGATCCCGCTCGGCGAGTGGGTGGTGGTCGGTAGCCTGCCGGATATCGTGCTGTTCCAG
GCCGATACCTATGCCGAGCTGTTCGCCCGGATCGTCGCCTCCTTCGGCAAGGACGTGGCGTTCAACATCAAG
CCGAAGCAGTTGCTCAAGACCGAGCCGCTGGTCGCCCTCAACCGTATCCAGGTGCAACTGAGCAGCATGTAT
CCGGAAAAGGGCGGCTACGTGCTGGTGGATTTCAGCGAGCCGCTGGACGACGAGTTGCAGGCGGTGCTGGTC
TATACCCAGGACCTGCCGCGGGTCATGGCGCTCTGCGTCGAGGCCGGCATCTATGCCGCGCCTGCCTACGAA
AGCCTGCGCGACGCCGAGGCCGAGTGA