ViewGene

Locus Name:
GeneID:
Location:

GeneID:4193
TrivialName: PA14_24410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24410
PAO1 Ortholog Locus:PA3072
Sequence Length:495
Protein Length:164
Start: 2126734
Stop: 2126240
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06460.1|AE004731_8 (AE004731) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 162/164 (98%), Positives = 163/164 (99%)
Sequence:
ATGAATCCGCTCGACCGGCTGGAACCGCTGATCGCCCCCCCGCCCATCGGCTGGTGGCCGCCGGCGCCCGGC
TGGTGGTTGCTGGCCGCCCTGCTGCCGTTGCTCGGTTGGGGGCTCTGGCGACTGCGCCGGCACCTGCCGCGG
CGCACCATCGCCACCCGCGGCGAAGCGCCGCTGGATCCGCTGCGCGAAGCGGCCCTGGCCGAACTGGCCGCG
CTTGCCAAGCCCTACGGCAGGGCTTCCGCCGGGCCCTGGCTGCAGGCCATCAACGGCCTGCTCAAGCGGGTC
TGCAGGGCGCGCTGGCCAGATAGCGGCAGCCACGCCCTCAGCGGCCGCGCCTGGCTGGCGTTCCTCGACAAC
CGTTGCCCGGCCGCCGGCCTGACCCGCTGGATGATCCTGGTGGAAGGCGGCTACCGTGCCGACTGCACCCTC
GACGACAAGGCCGTGGACGGCCTCGACGCCGCCGTCGCCACCTGGATTCGCAAGCATGTTTGA
Translation:
MNPLDRLEPLIAPPPIGWWPPAPGWWLLAALLPLLGWGLWRLRRHLPRRTIATRGEAPLDPLREAALAELAA
LAKPYGRASAGPWLQAINGLLKRVCRARWPDSGSHALSGRAWLAFLDNRCPAAGLTRWMILVEGGYRADCTL
DDKAVDGLDAAVATWIRKHV*
AnnotationID:4200GeneID:4193
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 13:01:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3072
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8388
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25529
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4193

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6467 PA3072_tr translation of PA3072 164 98.78 99.39 0 891.0
176361 gb|AAG06460.1|AE004731_8 (AE004731) hypothetical protein PA3072 [Pseudomonas aeruginosa PAO1] 164 98.78 99.39 0 891.0
176363 gb|AAO57230.1| (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 164 68.90 78.04 0 622.0
176362 gb|AAN67644.1|AE016394_5 (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440] 164 68.29 76.82 0 623.0
GC ORFID: 47195How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3072Glimmer Score:
Start: 2827196Stop: 2827690
Length: 495
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3072 translation of PA3072Homolog Bit Score 347.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene665 (ORF: BLASTX 247.0), t_PA3072 (ORF: GLIMMER)
GC ORF Sequence
ATGAATCCGCTCGACCGGCTGGAACCGCTGATCGCCCCCCCGCCCATCGGCTGGTGGCCGCCGGCGCCCGGC
TGGTGGTTGCTGGCCGCCCTGCTGCCGTTGCTCGGTTGGGGGCTCTGGCGACTGCGCCGGCACCTGCCGCGG
CGCACCATCGCCACCCGCGGCGAAGCGCCGCTGGATCCGCTGCGCGAAGCGGCCCTGGCCGAACTGGCCGCG
CTTGCCAAGCCCTACGGCAGGGCTTCCGCCGGGCCCTGGCTGCAGGCCATCAACGGCCTGCTCAAGCGGGTC
TGCAGGGCGCGCTGGCCAGATAGCGGCAGCCACGCCCTCAGCGGCCGCGCCTGGCTGGCGTTCCTCGACAAC
CGTTGCCCGGCCGCCGGCCTGACCCGCTGGATGATCCTGGTGGAAGGCGGCTACCGTGCCGACTGCACCCTC
GACGACAAGGCCGTGGACGGCCTCGACGCCGCCGTCGCCACCTGGATTCGCAAGCATGTTTGA