ViewGene

Locus Name:
GeneID:
Location:

GeneID:4192
TrivialName: PA14_32370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32370
PAO1 Ortholog Locus:PA2496
Sequence Length:516
Protein Length:171
Start: 2812065
Stop: 2812580
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05884.1|AE004677_1 (AE004677) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 170/171 (99%), Positives = 170/171 (99%)
Sequence:
ATGTCCCGACCCAACCTGCAAGTCGACCTGCTGGTCGAGTCCTTCAACTACAAGGCCTGGTCCGACCGCCGC
ACCCTCGATGCCATCGCCCGGATCGACGCCGAGGCGTTCCCGGCCTCGCTGGCCTTCGCCTTGCAACAGCTC
AATCACATGGCGATCGTCGAGGAACTGTTCAGGGCGCGCCTGCTGGGCGAGCCGGCGCCCCACCAACAGACC
AACAGCGAGGTGGTGCCTGGCTACGACGTCCTGCGTCGCCGGCTGGAGGATTCGGCCGCCTGGTTCGCCGGC
TATGTCGCCGAGCTGCCGCTGGAGCGTCGCGGCGAATGGCTGCGCTTCCGCTTCGCCGATGGCCGCGACGGC
GGCATGACGCGCCAGGAGATCCTCTTCCATATCGTCAACCATGGCACCTACCATCGCGGCGCCATCGGTCAT
GCCCTCGACCTGGCGGGCGCGCCCCGGCCGGCGGATACCTACACCCTGTATATCCACTCCGCGCAGCCGGAG
CGGCGGGAATAG
Translation:
MSRPNLQVDLLVESFNYKAWSDRRTLDAIARIDAEAFPASLAFALQQLNHMAIVEELFRARLLGEPAPHQQT
NSEVVPGYDVLRRRLEDSAAWFAGYVAELPLERRGEWLRFRFADGRDGGMTRQEILFHIVNHGTYHRGAIGH
ALDLAGAPRPADTYTLYIHSAQPERRE*
AnnotationID:4199GeneID:4192
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 15:03:51
Gene Name:
Confidence Code:3
GeneProduct:putative DNA damage-inducible gene
Cell Localization:()
Synonyms:PA2496
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05163
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam05163, DinB, DinB family.
CD-Length = 166 residues,  98.8% aligned
Score =  120 bits (303), Expect = 7e-29
Identities = 58/169 (34%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Genomic Context:
Comment:
ReferenceID:8386
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25527
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33036
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4192_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4192

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6466 PA2496_tr translation of PA2496 171 99.41 99.41 0 889.0
176360 gb|AAG05884.1|AE004677_1 (AE004677) hypothetical protein PA2496 [Pseudomonas aeruginosa PAO1] 171 99.41 99.41 0 889.0
GC ORFID: 47194How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2496Glimmer Score:
Start: 2141859Stop: 2141344
Length: 516
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2496 translation of PA2496Homolog Bit Score 347.0
Other Homologs: t_PA2496 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCCGACCCAACCTGCAAGTCGACCTGCTGGTCGAGTCCTTCAACTACAAGGCCTGGTCCGACCGCCGC
ACCCTCGATGCCATCGCCCGGATCGACGCCGAGGCGTTCCCGGCCTCGCTGGCCTTCGCCTTGCAACAGCTC
AATCACATGGCGATCGTCGAGGAACTGTTCAGGGCGCGCCTGCTGGGCGAGCCGGCGCCCCACCAACAGACC
AACAGCGAGGTGGTGCCTGGCTACGACGTCCTGCGTCGCCGGCTGGAGGATTCGGCCGCCTGGTTCGCCGGC
TATGTCGCCGAGCTGCCGCTGGAGCGTCGCGGCGAATGGCTGCGCTTCCGCTTCGCCGATGGCCGCGACGGC
GGCATGACGCGCCAGGAGATCCTCTTCCATATCGTCAACCATGGCACCTACCATCGCGGCGCCATCGGTCAT
GCCCTCGACCTGGCGGGCGCGCCCCGGCCGGCGGATACCTACACCCTGTATATCCACTCCGCGCAGCCGGAG
CGGCGGGAATAG