ViewGene

Locus Name:
GeneID:
Location:

GeneID:4191
TrivialName: PA14_35200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35200
PAO1 Ortholog Locus:PA2271
Sequence Length:516
Protein Length:171
Start: 3131865
Stop: 3131350
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05659.1|AE004653_2 (AE004653) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 170/171 (99%), Positives = 171/171 (100%)
Sequence:
ATGGACTACCGCATCAGAACCAGCCGCGACGAGGACGCCGCGCTGCTCCCGGCCATCGAGCGCTCAGCCGGG
GAAAGCTTCCGCCTGCTGCCCGAGCTGGCCTGGATCGCCGACGCCGGGGTCGCCGGGGTGGACTTCCATCGC
CGCCTGATCGAGCGCGGCAGCCACTGGCTGGCGGAAGACGCCGATGGCCAGCCGGTCGGTTTCCTCGCCGCC
GAACGCTGCGCCGACGAGTTGCACATCGCCGAGTTGTCCATCGCCCAGGCCCACCAGCAACAGGGCCTGGGC
CGCCGCCTGCTGGAGCGGGCGGTGACCTACGCCCACGCCAGCCACTGCCGGGCGCTGACCCTGACGACCTTC
TGCGACGTGCCCTGGAACGCGCCGTTCTACGCACGCCTGGGCTTCCAGCGGCTGACCTGGCAGGAAGCCGGC
GAGCGCCTGCGCGCGATCCTCGGCCACGAGCAGGAGATCGGCTTCGCCGCCGACAGCCGCTGCGCGATGCGC
CTGCTGCTCTAG
Translation:
MDYRIRTSRDEDAALLPAIERSAGESFRLLPELAWIADAGVAGVDFHRRLIERGSHWLAEDADGQPVGFLAA
ERCADELHIAELSIAQAHQQQGLGRRLLERAVTYAHASHCRALTLTTFCDVPWNAPFYARLGFQRLTWQEAG
ERLRAILGHEQEIGFAADSRCAMRLLL*
AnnotationID:4198GeneID:4191
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 09:09:40
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA2271
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE36644.1| (BX640427) putative acetyltransferase [Bordetella parapertussis]
          Length = 183

 Score =  147 bits (370), Expect = 3e-35
 Identities = 81/164 (49%), Positives = 100/164 (60%)

>gb|AAN68850.1|AE016517_10 (AE016786) acetyltransferase, GNAT family [Pseudomonas putida
           KT2440]
          Length = 169

 Score =  145 bits (366), Expect = 1e-34
 Identities = 78/165 (47%), Positives = 96/165 (58%), Gaps = 2/165 (1%)

Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues, 100.0% aligned
Score = 54.1 bits (130), Expect = 9e-09
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Genomic Context:
Comment:
ReferenceID:8384
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25525
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32509
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4191_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4191

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6465 PA2271_tr translation of PA2271 171 99.41 99.99 0 890.0
176356 gb|AAG05659.1|AE004653_2 (AE004653) probable acetyltransferase [Pseudomonas aeruginosa PAO1] 171 99.41 99.99 0 890.0
176359 gb|AAN68850.1|AE016517_10 (AE016786) acetyltransferase, GNAT family [Pseudomonas putida KT2440] 174 46.55 58.04 8 364.0
176357 emb|CAE36644.1| (BX640427) putative acetyltransferase [Bordetella parapertussis] 183 44.26 55.19 12 363.0
176358 emb|CAE32902.1| (BX640444) putative acetyltransferase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 183 44.26 55.19 12 362.0
GC ORFID: 47193How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2271Glimmer Score:
Start: 1822051Stop: 1822566
Length: 516
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2271 translation of PA2271Homolog Bit Score 347.0
Other Homologs: t_PA2271 (ORF: GLIMMER)
GC ORF Sequence
ATGGACTACCGCATCAGAACCAGCCGCGACGAGGACGCCGCGCTGCTCCCGGCCATCGAGCGCTCAGCCGGG
GAAAGCTTCCGCCTGCTGCCCGAGCTGGCCTGGATCGCCGACGCCGGGGTCGCCGGGGTGGACTTCCATCGC
CGCCTGATCGAGCGCGGCAGCCACTGGCTGGCGGAAGACGCCGATGGCCAGCCGGTCGGTTTCCTCGCCGCC
GAACGCTGCGCCGACGAGTTGCACATCGCCGAGTTGTCCATCGCCCAGGCCCACCAGCAACAGGGCCTGGGC
CGCCGCCTGCTGGAGCGGGCGGTGACCTACGCCCACGCCAGCCACTGCCGGGCGCTGACCCTGACGACCTTC
TGCGACGTGCCCTGGAACGCGCCGTTCTACGCACGCCTGGGCTTCCAGCGGCTGACCTGGCAGGAAGCCGGC
GAGCGCCTGCGCGCGATCCTCGGCCACGAGCAGGAGATCGGCTTCGCCGCCGACAGCCGCTGCGCGATGCGC
CTGCTGCTCTAG