ViewGene
Locus Name:
GeneID:
Location:

GeneID:4190
TrivialName: PA14_36920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36920
PAO1 Ortholog Locus:PA2137
Sequence Length:537
Protein Length:178
Start: 3290863
Stop: 3290327
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05525.1|AE004641_4 (AE004641) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 176/178 (98%), Positives = 177/178 (99%)
Sequence:
ATGAACAGGCGCCTTCCGGGCACTCTGCTGATCGCACTTTGCGATCAGCCCGCGCCCAATCGCCGTGGTCAC
GCTGCTCCGGCGCAAGCGGGGCGGACGGCGCGAACCTTGCAGCGAAGCCTTCCTGACAATCCGACAGGGAGA
ACCATGGTGAACGGAGAAAACAAGATCGTCCTGGTCCTCGAAGAACACGCCGACCAGCTCTGGCGGATCGAG
GAATTCCTCCTTGATCGAGGCTACGCGGTGCTCAGCGCGGCGAGTCGCGACGAAGCCCTCGACCACCTGGCC
TCGGACGCGGTGATCGACCTGTTCCTGCTCAGCGAGCAGCTCGAAGGTCCTCTGAGCGGCAGCATGCTCATC
GAAACCAGCCTGCCGGTGCGCCCGCGGATGCGGGTGATCCTGCTCAGCGACAGCGCTCGCGTCGGCATCGAC
CCGGCGGCACCCTATCCGGTGCTGCTCAAACCAGTGACCCTGGAGGAACTGGGGAAAGCCATCGACCTGGTC
CTGCACAGCGCGCCGGTCTGCCCCGGCGTCTGA
Translation:
MNRRLPGTLLIALCDQPAPNRRGHAAPAQAGRTARTLQRSLPDNPTGRTMVNGENKIVLVLEEHADQLWRIE
EFLLDRGYAVLSAASRDEALDHLASDAVIDLFLLSEQLEGPLSGSMLIETSLPVRPRMRVILLSDSARVGID
PAAPYPVLLKPVTLEELGKAIDLVLHSAPVCPGV*
AnnotationID:4197GeneID:4190
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 11:11:21
Gene Name:
Confidence Code:3
GeneProduct:putative histidine kinase
Cell Localization:()
Synonyms:PA2137
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG59289.1|AE005642_8 (AE005642) putative histidine kinase [Escherichia coli O157:H7
           EDL933]
          Length = 756

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 3/134 (2%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8382




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25523




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32569




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4190_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4190
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6464
                           PA2137_tr
                           translation of PA2137
                           178
                           98.87
                           99.43
                           0
                           889.0
     

     
     
176355
                           gb|AAG05525.1|AE004641_4
                           (AE004641) hypothetical protein PA2137 [Pseudomonas aeruginosa PAO1]
                           178
                           98.87
                           99.43
                           0
                           889.0
     

     






      

          
GC ORFID: 47192How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2137Glimmer Score: 

          
Start: 1663051Stop: 1663587

          
Length: 537


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2137 translation of PA2137Homolog Bit Score 347.0

          
Other Homologs:  t_PA2137 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGGCGCCTTCCGGGCACTCTGCTGATCGCACTTTGCGATCAGCCCGCGCCCAATCGCCGTGGTCAC 
GCTGCTCCGGCGCAAGCGGGGCGGACGGCGCGAACCTTGCAGCGAAGCCTTCCTGACAATCCGACAGGGAGA 
ACCATGGTGAACGGAGAAAACAAGATCGTCCTGGTCCTCGAAGAACACGCCGACCAGCTCTGGCGGATCGAG 
GAATTCCTCCTTGATCGAGGCTACGCGGTGCTCAGCGCGGCGAGTCGCGACGAAGCCCTCGACCACCTGGCC 
TCGGACGCGGTGATCGACCTGTTCCTGCTCAGCGAGCAGCTCGAAGGTCCTCTGAGCGGCAGCATGCTCATC 
GAAACCAGCCTGCCGGTGCGCCCGCGGATGCGGGTGATCCTGCTCAGCGACAGCGCTCGCGTCGGCATCGAC 
CCGGCGGCACCCTATCCGGTGCTGCTCAAACCAGTGACCCTGGAGGAACTGGGGAAAGCCATCGACCTGGTC 
CTGCACAGCGCGCCGGTCTGCCCCGGCGTCTGA