ViewGene
Locus Name:
GeneID:
Location:

GeneID:419
TrivialName: PA14_33130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33130
PAO1 Ortholog Locus:PA2435
Sequence Length:1986
Protein Length:661
Start: 2900290
Stop: 2902275
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05823.1|AE004670_11 (AE004670) probable cation-transporting P-type ATPase [Pseudomonas aeruginosa PAO1]
Identities = 657/661 (99%), Positives = 658/661 (99%)
Sequence:
ATGAGCGAGCCGACCGCCCACGGCAGCCATGGCGGCTGCGCGCATCACCATCATCACCTGCCGTTCGGCGGC
GGCCTGCTCAGCCGCGACGAGCAGCGCCGCGCCGCCCGCCAGCTGAGCCTGGCGATGCTCGCCCTTGGCCTG
TTGCTGCTCGGCCTGGCCTGGCGCTGGCTGGCGGCGGACCAGGCCGGGGTCAGCCAGATCCTGCTCGGTGTC
GCGTCGCTGCTGGTGGCGCTGCCGGTGGCCCGCTCGGCCTGGGACAGCCTGCGGCATCCGAGCCTGCACGGC
GTCACCGACCAGTTGATCGCGCTGGCCATGCTCGGCGCCTGGGCCAGCGGCGACCTGCTGACCGCCGCGCTG
CTGCCGATCATCATGATCTTCGGCCACGTGCTGGAGGAGCGCAGCGTGATCGGCTCCCAGGAGGCCATCGCC
GCCCTCGGCGAACTGACCCGCAGCCATGCCCGGCGGATCGAGGCCGACGGCAGCCTGAGCGAGGTGGACAAC
GCCAGCCTGCGGGCGGGCGACCAGGTGGAAGTGCGCGCCGGCGACCGGGTTCCGGCCGACGGGCGGGTCCTG
CAAGGCCAGGCCAGTCTCGACACCGCGCCGATCACCGGCGAGTCGGTGCCGCTCGAGGTGGCGCCGGGGATG
GAGGTCTACggCGGCGCGATCAACCTCGACGGCCTGCTGCGCATCGAGATAACCCGTACCGGCGAGGCCTCG
ACCCTGGGCAAGGTGATCGGCCTGATGCAGCAGGCCGAGCGCGCCAAGCCGCCGATCACCCGCCTGCTGGAG
CGCTACGCCGGGCAGTACATGTTGCTGGTGTTGCTGATCGCCGCCGTCACCTGGTTCGTCACCAACGATGCC
CAGGCCATGCTCGCCGTGCTGGTCGCCGCCTGTCCCTGCGCCCTGGTGCTGTCCGCCCCGGCCACGGCCATC
GCCGGGATCGCCGTGGCCGCCCGTCATGGCATCCTGATCCGCAGCTCGGCCTTCCTCGAGGAGCTGGCGGAC
CTGACTTCGCTGGTGGTCGACAAGACCGGCACCCTGACCCACGGCAGCCTGCGTCTGCAGGCGCTGCGCCTG
GCCGATGCCGCCGAGGAGGCGTCGGTGCTGCGCCTGGCCGCCAGCCTCGGCGCCGCCAGCAGCCATCCGGTG
AGCCGAGCGCTGGCGGCCCTGGCGGCGCACGATGCCTATCATCCATTGAGCGATATCCGCGAACGCCAGGGG
TTCGGCGTGGTCGCACGAACAGCGGCGGGCGAAGCCGCCCTCGGCCGGCCCGAGCTGTTCCAGCAACTGGGC
ATCGACGCCGGCGAGGTGCCGGCGCACGAGGGACCGATCGCCGGAATCGCCCTGGACGGGCGCTTCCTCGGC
TGGCTGCTGCTGGCCGACAGCGTACGCGCGGAGGCCGCCGAGGCCCTGGCCGATCTGCGCGAACTGGGTCTG
GGCCGGCAACTGTTGCTGACCGGCGATCGCCAGGCGGTGGCCGACGCCGTGGCCAAGCAGGTGGGGATTCGC
CAGTTGGTGGCGCAGGCGTTGCCGGAGGACAAGTTGCGCCAGGTCGGCGCGGAGATCGGCAGCGGTTTCCGG
CCGATGGTGGTCGGCGACGGCATCAACGATTCGCTGGCGCTGAAGGCCGGTGTGGTCGGGGTGGCAATGGGT
GCCGGCGGCGCCGATATCGCCCTGGCCTCGGCGGATATCGTGCTGATCGGCAGCGACCTGCGCCGGCTCGGC
ACCTGCGTGCGGCTCAGCCGGCAATGCCGGCGGACCCTGCAGGTCAACGTGGCGATCGGCCTCGGCTGGACC
CTGGCGATCGTCGCCGCGGCAGCCTTTGGCCTGCTCGGCGCGGCCGGGGCGATGGTCGCGGCGCTGCTGCAT
AACCTCAGCACCTTGCTGGTGCTGGGCAATGCCGGACGCCTGCTGCGTTTCGAGGAGCCCCTCGGGCAGCCC
CGGCCGGCCGTGGAGGGACGCGAAGAGGAGGGTACACCGTGA
Translation:
MSEPTAHGSHGGCAHHHHHLPFGGGLLSRDEQRRAARQLSLAMLALGLLLLGLAWRWLAADQAGVSQILLGV
ASLLVALPVARSAWDSLRHPSLHGVTDQLIALAMLGAWASGDLLTAALLPIIMIFGHVLEERSVIGSQEAIA
ALGELTRSHARRIEADGSLSEVDNASLRAGDQVEVRAGDRVPADGRVLQGQASLDTAPITGESVPLEVAPGM
EVYGGAINLDGLLRIEITRTGEASTLGKVIGLMQQAERAKPPITRLLERYAGQYMLLVLLIAAVTWFVTNDA
QAMLAVLVAACPCALVLSAPATAIAGIAVAARHGILIRSSAFLEELADLTSLVVDKTGTLTHGSLRLQALRL
ADAAEEASVLRLAASLGAASSHPVSRALAALAAHDAYHPLSDIRERQGFGVVARTAAGEAALGRPELFQQLG
IDAGEVPAHEGPIAGIALDGRFLGWLLLADSVRAEAAEALADLRELGLGRQLLLTGDRQAVADAVAKQVGIR
QLVAQALPEDKLRQVGAEIGSGFRPMVVGDGINDSLALKAGVVGVAMGAGGADIALASADIVLIGSDLRRLG
TCVRLSRQCRRTLQVNVAIGLGWTLAIVAAAAFGLLGAAGAMVAALLHNLSTLLVLGNAGRLLRFEEPLGQP
RPAVEGREEEGTP*
AnnotationID:428GeneID:419
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:09
Gene Name:
Confidence Code:3
GeneProduct:probable cation-transporting P-type ATPase
Cell Localization:()
Synonyms:PA2435
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:841




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17983




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:419
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
709
                           PA2435_tr
                           translation of PA2435
                           661
                           99.39
                           99.54
                           0
                           3241.0
     

     
     
31801
                           gb|AAG05823.1|AE004670_11
                           (AE004670) probable cation-transporting P-type ATPase [Pseudomonas aeruginosa PAO1]
                           661
                           99.39
                           99.54
                           0
                           3241.0
     

     
     
31802
                           gb|AAO58951.1|
                           (AE016876) cadmium-translocating P-type ATPase [Pseudomonas syringae pv. tomato str. DC3000]
                           663
                           75.56
                           83.71
                           24
                           2446.0
     

     






      

          
GC ORFID: 43421How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2435Glimmer Score: 

          
Start: 2053626Stop: 2051641

          
Length: 1986


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2435 translation of PA2435Homolog Bit Score 1253.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4162 (ORF: BLASTX 942.0), t_PA2435 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAGCCGACCGCCCACGGCAGCCATGGCGGCTGCGCGCATCACCATCATCACCTGCCGTTCGGCGGC 
GGCCTGCTCAGCCGCGACGAGCAGCGCCGCGCCGCCCGCCAGCTGAGCCTGGCGATGCTCGCCCTTGGCCTG 
TTGCTGCTCGGCCTGGCCTGGCGCTGGCTGGCGGCGGACCAGGCCGGGGTCAGCCAGATCCTGCTCGGTGTC 
GCGTCGCTGCTGGTGGCGCTGCCGGTGGCCCGCTCGGCCTGGGACAGCCTGCGGCATCCGAGCCTGCACGGC 
GTCACCGACCAGTTGATCGCGCTGGCCATGCTCGGCGCCTGGGCCAGCGGCGACCTGCTGACCGCCGCGCTG 
CTGCCGATCATCATGATCTTCGGCCACGTGCTGGAGGAGCGCAGCGTGATCGGCTCCCAGGAGGCCATCGCC 
GCCCTCGGCGAACTGACCCGCAGCCATGCCCGGCGGATCGAGGCCGACGGCAGCCTGAGCGAGGTGGACAAC 
GCCAGCCTGCGGGCGGGCGACCAGGTGGAAGTGCGCGCCGGCGACCGGGTTCCGGCCGACGGGCGGGTCCTG 
CAAGGCCAGGCCAGTCTCGACACCGCGCCGATCACCGGCGAGTCGGTGCCGCTCGAGGTGGCGCCGGGGATG 
GAGGTCTACggCGGCGCGATCAACCTCGACGGCCTGCTGCGCATCGAGATAACCCGTACCGGCGAGGCCTCG 
ACCCTGGGCAAGGTGATCGGCCTGATGCAGCAGGCCGAGCGCGCCAAGCCGCCGATCACCCGCCTGCTGGAG 
CGCTACGCCGGGCAGTACATGTTGCTGGTGTTGCTGATCGCCGCCGTCACCTGGTTCGTCACCAACGATGCC 
CAGGCCATGCTCGCCGTGCTGGTCGCCGCCTGTCCCTGCGCCCTGGTGCTGTCCGCCCCGGCCACGGCCATC 
GCCGGGATCGCCGTGGCCGCCCGTCATGGCATCCTGATCCGCAGCTCGGCCTTCCTCGAGGAGCTGGCGGAC 
CTGACTTCGCTGGTGGTCGACAAGACCGGCACCCTGACCCACGGCAGCCTGCGTCTGCAGGCGCTGCGCCTG 
GCCGATGCCGCCGAGGAGGCGTCGGTGCTGCGCCTGGCCGCCAGCCTCGGCGCCGCCAGCAGCCATCCGGTG 
AGCCGAGCGCTGGCGGCCCTGGCGGCGCACGATGCCTATCATCCATTGAGCGATATCCGCGAACGCCAGGGG 
TTCGGCGTGGTCGCACGAACAGCGGCGGGCGAAGCCGCCCTCGGCCGGCCCGAGCTGTTCCAGCAACTGGGC 
ATCGACGCCGGCGAGGTGCCGGCGCACGAGGGACCGATCGCCGGAATCGCCCTGGACGGGCGCTTCCTCGGC 
TGGCTGCTGCTGGCCGACAGCGTACGCGCGGAGGCCGCCGAGGCCCTGGCCGATCTGCGCGAACTGGGTCTG 
GGCCGGCAACTGTTGCTGACCGGCGATCGCCAGGCGGTGGCCGACGCCGTGGCCAAGCAGGTGGGGATTCGC 
CAGTTGGTGGCGCAGGCGTTGCCGGAGGACAAGTTGCGCCAGGTCGGCGCGGAGATCGGCAGCGGTTTCCGG 
CCGATGGTGGTCGGCGACGGCATCAACGATTCGCTGGCGCTGAAGGCCGGTGTGGTCGGGGTGGCAATGGGT 
GCCGGCGGCGCCGATATCGCCCTGGCCTCGGCGGATATCGTGCTGATCGGCAGCGACCTGCGCCGGCTCGGC 
ACCTGCGTGCGGCTCAGCCGGCAATGCCGGCGGACCCTGCAGGTCAACGTGGCGATCGGCCTCGGCTGGACC 
CTGGCGATCGTCGCCGCGGCAGCCTTTGGCCTGCTCGGCGCGGCCGGGGCGATGGTCGCGGCGCTGCTGCAT 
AACCTCAGCACCTTGCTGGTGCTGGGCAATGCCGGACGCCTGCTGCGTTTCGAGGAGCCCCTCGGGCAGCCC 
CGGCCGGCCGTGGAGGGACGCGAAGAGGAGGGTACACCGTGA