ViewGene
Locus Name:
GeneID:
Location:

GeneID:4189
TrivialName: PA14_50900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50900
PAO1 Ortholog Locus:PA1039
Sequence Length:474
Protein Length:157
Start: 4523592
Stop: 4524065
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04428.1|AE004536_7 (AE004536) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 155/157 (98%), Positives = 157/157 (100%)
Sequence:
ATGACCCAACCCACCTGCCCCTGCGGCAGCGGCGACCCGCTCGACGATTGCTGCGGCCGCTATCACCAGGGA
CATCCCGCGCCCACCGCGGAAGCCCTGATGCGCTCGCGCTACAGCGCCTATGCCCTCGGACTGGTGGACTAC
CTGCGCGACACCACGCTGCCGGCGCAACAGGCCGGCCTCGATCTCGACGGCATCCGCGCCTGGAGCCACGGC
AGCACCTGGCTCGGCCTGGAGGTGGAAAACCACGAGGTGCTCGGCGGCCAGCCGGAGCATGCGCGAGTCACC
TTCGTCGCGCGCTGGCACGACGCCGAGGGGGAACATGCCCATCGCGAATGTTCCGGCTTCGTCCAGCGCAAC
GGTCGCTGGTACTTCCTCGATCCGACCGTGGCCCTGAAACTCGGCCGCAACGACCCCTGCCCCTGCGGCGCC
GGCGGCAAGCTGAAGAAATGCTGCGGTCCATGGATCACCTGA
Translation:
MTQPTCPCGSGDPLDDCCGRYHQGHPAPTAEALMRSRYSAYALGLVDYLRDTTLPAQQAGLDLDGIRAWSHG
STWLGLEVENHEVLGGQPEHARVTFVARWHDAEGEHAHRECSGFVQRNGRWYFLDPTVALKLGRNDPCPCGA
GGKLKKCCGPWIT*
AnnotationID:4196GeneID:4189
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 18:06:36
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1039
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3012
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3012, Uncharacterized protein conserved in bacteria [Function unknown]
        CD-Length = 151 residues, 100.0% aligned
        Score =  208 bits (530), Expect = 3e-55






   
Genomic Context:






   
Comment:


















    ReferenceID:8380




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25521




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4189
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6463
                           PA1039_tr
                           translation of PA1039
                           157
                           98.72
                           99.99
                           0
                           891.0
     

     
     
176337
                           gb|AAG04428.1|AE004536_7
                           (AE004536) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           157
                           98.72
                           99.99
                           0
                           891.0
     

     
     
176338
                           gb|AAN66744.1|AE016302_6
                           (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440]
                           160
                           68.12
                           75.62
                           3
                           607.0
     

     
     
176339
                           gb|AAO57583.1|
                           (AE016870) SEC-C motif domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           157
                           66.24
                           72.61
                           0
                           578.0
     

     
     
176340
                           gb|AAR34374.1|
                           (AE017210) SEC-C motif domain protein [Geobacter sulfurreducens PCA]
                           167
                           43.11
                           52.69
                           16
                           344.0
     

     






      

          
GC ORFID: 47191How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1039Glimmer Score: 

          
Start: 430316Stop: 429843

          
Length: 474


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1039 translation of PA1039Homolog Bit Score 347.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6089 (ORF: BLASTX 232.0), t_PA1039 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCAACCCACCTGCCCCTGCGGCAGCGGCGACCCGCTCGACGATTGCTGCGGCCGCTATCACCAGGGA 
CATCCCGCGCCCACCGCGGAAGCCCTGATGCGCTCGCGCTACAGCGCCTATGCCCTCGGACTGGTGGACTAC 
CTGCGCGACACCACGCTGCCGGCGCAACAGGCCGGCCTCGATCTCGACGGCATCCGCGCCTGGAGCCACGGC 
AGCACCTGGCTCGGCCTGGAGGTGGAAAACCACGAGGTGCTCGGCGGCCAGCCGGAGCATGCGCGAGTCACC 
TTCGTCGCGCGCTGGCACGACGCCGAGGGGGAACATGCCCATCGCGAATGTTCCGGCTTCGTCCAGCGCAAC 
GGTCGCTGGTACTTCCTCGATCCGACCGTGGCCCTGAAACTCGGCCGCAACGACCCCTGCCCCTGCGGCGCC 
GGCGGCAAGCTGAAGAAATGCTGCGGTCCATGGATCACCTGA