ViewGene

Locus Name:
GeneID:
Location:

GeneID:4188
TrivialName: PA14_53640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53640
PAO1 Ortholog Locus:PA0824
Sequence Length:519
Protein Length:172
Start: 4757720
Stop: 4758238
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04213.1|AE004517_8 (AE004517) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 169/172 (98%), Positives = 169/172 (98%)
Sequence:
ATGAGTGGAAAACCCGCCGCCCGCGTCACCGATCCAACGACCTGCCCAGTGCCAGGGCATGGCAGCAACCCC
ATCGTCCAGGGCTCTCCCGACGTCGTTTTCGACGGCCTGCCGGCAGCACGGCAAGGCGACACCTCAGCCTGC
GGAAGCCCGATGATCTCAGCCGTTTCGTCGACGGTACTCATCAACGGCCTACCGGCGGTGACGCTGGGTAGT
ATCGGGGCGCACGGCAACGTGGTGATCGGCGGCTCGGGGACGGTACTCATCGGCGACGTCTTCACGCCCGCC
CCGCGCGCTCCCGCCCTTCCCCTTAACCGCAACAGCGTGCCCTGTTCCGGGCGCTTCCAGCTCATCGACCAC
GAAACGGGCAAGCCCGTCGCCGGACGCCGGGTCAGGGTCTGGTCGAGTGGCGGCTGGAATGCGTTCGACACC
ACGGATGCCGACGGCATGACCTCCTGGATCGAGCGCCCCACCGCGGAGACCCTCTACATCGACCTGGTGCAG
AGGGGCGACGCATGA
Translation:
MSGKPAARVTDPTTCPVPGHGSNPIVQGSPDVVFDGLPAARQGDTSACGSPMISAVSSTVLINGLPAVTLGS
IGAHGNVVIGGSGTVLIGDVFTPAPRAPALPLNRNSVPCSGRFQLIDHETGKPVAGRRVRVWSSGGWNAFDT
TDADGMTSWIERPTAETLYIDLVQRGDA*
AnnotationID:4195GeneID:4188
AnnotatorUID: danlee
Modification Date/Time: 2004-04-22 13:01:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0824
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4104
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG4104, Uncharacterized conserved protein [Function unknown]
       CD-Length = 98 residues,  96.9% aligned
       Score = 73.1 bits (179), Expect = 4e-14
Genomic Context:
Comment:
ReferenceID:8378
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25519
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4188

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6461 PA0824_tr translation of PA0824 172 98.25 98.25 0 889.0
176333 gb|AAG04213.1|AE004517_8 (AE004517) hypothetical protein PA0824 [Pseudomonas aeruginosa PAO1] 172 98.25 98.25 0 889.0
176334 gb|AAO58852.1| (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 175 48.00 60.57 4 404.0
176335 gb|AAO58079.1| (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 180 45.55 57.77 11 385.0
6462 PA3904_tr translation of PA3904 188 38.29 46.80 73 338.0
GC ORFID: 47190How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0824Glimmer Score:
Start: 196187Stop: 195669
Length: 519
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0824 translation of PA0824Homolog Bit Score 347.0
Other Homologs: t_PA0824 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTGGAAAACCCGCCGCCCGCGTCACCGATCCAACGACCTGCCCAGTGCCAGGGCATGGCAGCAACCCC
ATCGTCCAGGGCTCTCCCGACGTCGTTTTCGACGGCCTGCCGGCAGCACGGCAAGGCGACACCTCAGCCTGC
GGAAGCCCGATGATCTCAGCCGTTTCGTCGACGGTACTCATCAACGGCCTACCGGCGGTGACGCTGGGTAGT
ATCGGGGCGCACGGCAACGTGGTGATCGGCGGCTCGGGGACGGTACTCATCGGCGACGTCTTCACGCCCGCC
CCGCGCGCTCCCGCCCTTCCCCTTAACCGCAACAGCGTGCCCTGTTCCGGGCGCTTCCAGCTCATCGACCAC
GAAACGGGCAAGCCCGTCGCCGGACGCCGGGTCAGGGTCTGGTCGAGTGGCGGCTGGAATGCGTTCGACACC
ACGGATGCCGACGGCATGACCTCCTGGATCGAGCGCCCCACCGCGGAGACCCTCTACATCGACCTGGTGCAG
AGGGGCGACGCATGA