ViewGene

Locus Name:
GeneID:
Location:

GeneID:4187
TrivialName: PA14_05970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05970
PAO1 Ortholog Locus:PA0457
Sequence Length:525
Protein Length:174
Start: 528414
Stop: 528938
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03846.1|AE004483_4 (AE004483) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 174/174 (100%), Positives = 174/174 (100%)
Sequence:
ATGAAGCCTGTGCAATCCCGTCGTCTGGCCTTCGCCGCGCTGTTGTCGCTGTCGTTCTCTTCCGCGTCCTGC
CATGCCGCCACCGAGCACTGGGGCTGGATCGAGCAGTCCTGGCTGATGCCCGAGCGCATGCAGGCCAAGGCC
AAGCTGGATACCGGCGCGCTGACCTCGTCGCTGGACGCGAGGAATATCCATCGCTACAAGAAGGACGGCGAG
CGCTGGGTGCGCTTCGATGTCGTGCTGCCCACCGCCGACAGCAAGGCGCCGGTCAGCGTGACCTTCGAGCGC
AAGGTGCTGCGGCTGATCAAGGTGCGCGGCGCCGGTGGCAGCGACAGCCGTCCGGTGGTGGCGATGGACATC
TGCCTGGGCGCCAAGCTGCTGCGCGAGCAGTTCTCCCTGCGCGACCGCGGCAACATGAACTATCCGGTGCTG
CTCGGCCGCCGCACGCTCGAACACCTCGGCGCGGTCGACGTGTCCCGAACCTTTACCCGCAAACCTACCTGC
AGCGCGCTCGCCGCTCAGTAG
Translation:
MKPVQSRRLAFAALLSLSFSSASCHAATEHWGWIEQSWLMPERMQAKAKLDTGALTSSLDARNIHRYKKDGE
RWVRFDVVLPTADSKAPVSVTFERKVLRLIKVRGAGGSDSRPVVAMDICLGAKLLREQFSLRDRGNMNYPVL
LGRRTLEHLGAVDVSRTFTRKPTCSALAAQ*
AnnotationID:4194GeneID:4187
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 08:08:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0457
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8376
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25517
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33769
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4187_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4187

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6460 PA0457_tr translation of PA0457 174 99.99 99.99 0 892.0
176331 gb|AAG03846.1|AE004483_4 (AE004483) hypothetical protein PA0457 [Pseudomonas aeruginosa PAO1] 174 99.99 99.99 0 892.0
176332 emb|CAD84206.1| (BX321857) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] 249 26.50 42.16 80 275.0
GC ORFID: 47189How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0457Glimmer Score:
Start: 6329756Stop: 6330280
Length: 525
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0457 translation of PA0457Homolog Bit Score 348.0
Other Homologs: t_PA0457 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGCCTGTGCAATCCCGTCGTCTGGCCTTCGCCGCGCTGTTGTCGCTGTCGTTCTCTTCCGCGTCCTGC
CATGCCGCCACCGAGCACTGGGGCTGGATCGAGCAGTCCTGGCTGATGCCCGAGCGCATGCAGGCCAAGGCC
AAGCTGGATACCGGCGCGCTGACCTCGTCGCTGGACGCGAGGAATATCCATCGCTACAAGAAGGACGGCGAG
CGCTGGGTGCGCTTCGATGTCGTGCTGCCCACCGCCGACAGCAAGGCGCCGGTCAGCGTGACCTTCGAGCGC
AAGGTGCTGCGGCTGATCAAGGTGCGCGGCGCCGGTGGCAGCGACAGCCGTCCGGTGGTGGCGATGGACATC
TGCCTGGGCGCCAAGCTGCTGCGCGAGCAGTTCTCCCTGCGCGACCGCGGCAACATGAACTATCCGGTGCTG
CTCGGCCGCCGCACGCTCGAACACCTCGGCGCGGTCGACGTGTCCCGAACCTTTACCCGCAAACCTACCTGC
AGCGCGCTCGCCGCTCAGTAG