ViewGene
Locus Name:
GeneID:
Location:

GeneID:4186
TrivialName: PA14_02750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02750
PAO1 Ortholog Locus:PA0225
Sequence Length:540
Protein Length:179
Start: 244942
Stop: 245481
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03614.1|AE004460_7 (AE004460) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 179/179 (100%), Positives = 179/179 (100%)
Sequence:
ATGTCCATGCGCTTGAAATTGCTGAGAAAAAAACTCGGGGTCACGCTGGAGACCCTGGCCGAGAAGACCGGC
CTGACCAAGAGCTACCTGTCCAAGGTCGAGCGCGGGCTGAACACGCCGTCCATTGCCGCCGCGCTGAAGCTG
GCGAAGGCGTTGAACGTGCAGGTGGAGGAGCTGTTCTCCGAGGAAAGCGACGGTGTCGACGGCTACAGCATC
GTTCGTCGCGACCAGCGCAAGTCGCTGTCCAGCGGCGACGACGGCCCGGCCTACGCCTCCCTCGCGCAGCAG
ATCGGCGCCCGCGCGCTGTTGCCGTTCATCGTCCACCCGCCGCGCGATTTCAGTCACTCGACGTTCAAGGAG
CACCTCGGCGAAGAGTTCATCTTCGTCCATGAGGGCCAGGTCGAGGTCGACTTCATGAACCAGCGGATCATC
CTCGAGCGCGGCGACGCCCTGCATTTCAACGCACAGAAGCCGCACCGCATCCGCTCCCTGGGGGAGACCCAG
GCGGAATTGCTGGTGGTGATCCACAGCGACGAATGA
Translation:
MSMRLKLLRKKLGVTLETLAEKTGLTKSYLSKVERGLNTPSIAAALKLAKALNVQVEELFSEESDGVDGYSI
VRRDQRKSLSSGDDGPAYASLAQQIGARALLPFIVHPPRDFSHSTFKEHLGEEFIFVHEGQVEVDFMNQRII
LERGDALHFNAQKPHRIRSLGETQAELLVVIHSDE*
AnnotationID:4193GeneID:4186
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 13:01:12
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA0225
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00530,COG1476
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68733.1|AE016505_6 (AE016785) transcriptional regulator, Cro/CI family [Pseudomonas
           putida KT2440]
          Length = 180

 Score =  257 bits (656), Expect = 3e-68
 Identities = 126/176 (71%), Positives = 150/176 (85%)

>emb|CAD14861.1| (AL646063) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 182

 Score =  179 bits (454), Expect = 7e-45
 Identities = 95/175 (54%), Positives = 121/175 (69%), Gaps = 1/175 (0%)








 
Structural Features:
smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
CD-Length = 56 residues, 100.0% aligned
Score = 62.1 bits (151), Expect = 4e-11
Identities = 29/56 (51%), Positives = 40/56 (71%)

COG1476, COG1476, Predicted transcriptional regulators [Transcription]
CD-Length = 68 residues,  97.1% aligned
Score = 57.5 bits (139), Expect = 1e-09
Identities = 24/66 (36%), Positives = 40/66 (60%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8374




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25515




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33584




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4186_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4186
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6459
                           PA0225_tr
                           translation of PA0225
                           179
                           99.99
                           99.99
                           0
                           894.0
     

     
     
176328
                           gb|AAG03614.1|AE004460_7
                           (AE004460) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           179
                           99.99
                           99.99
                           0
                           894.0
     

     
     
176329
                           gb|AAN68733.1|AE016505_6
                           (AE016785) transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440]
                           180
                           71.11
                           85.00
                           1
                           658.0
     

     
     
176330
                           emb|CAD14861.1|
                           (AL646063) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           183
                           51.91
                           66.66
                           5
                           453.0
     

     






      

          
GC ORFID: 47188How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0225Glimmer Score: 

          
Start: 6046283Stop: 6046822

          
Length: 540


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0225 translation of PA0225Homolog Bit Score 348.0

          
Other Homologs:  t_PA0225 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCATGCGCTTGAAATTGCTGAGAAAAAAACTCGGGGTCACGCTGGAGACCCTGGCCGAGAAGACCGGC 
CTGACCAAGAGCTACCTGTCCAAGGTCGAGCGCGGGCTGAACACGCCGTCCATTGCCGCCGCGCTGAAGCTG 
GCGAAGGCGTTGAACGTGCAGGTGGAGGAGCTGTTCTCCGAGGAAAGCGACGGTGTCGACGGCTACAGCATC 
GTTCGTCGCGACCAGCGCAAGTCGCTGTCCAGCGGCGACGACGGCCCGGCCTACGCCTCCCTCGCGCAGCAG 
ATCGGCGCCCGCGCGCTGTTGCCGTTCATCGTCCACCCGCCGCGCGATTTCAGTCACTCGACGTTCAAGGAG 
CACCTCGGCGAAGAGTTCATCTTCGTCCATGAGGGCCAGGTCGAGGTCGACTTCATGAACCAGCGGATCATC 
CTCGAGCGCGGCGACGCCCTGCATTTCAACGCACAGAAGCCGCACCGCATCCGCTCCCTGGGGGAGACCCAG 
GCGGAATTGCTGGTGGTGATCCACAGCGACGAATGA