ViewGene
Locus Name:
GeneID:
Location:

GeneID:4185
TrivialName: PA14_64360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64360
PAO1 Ortholog Locus:PA4866
Sequence Length:519
Protein Length:172
Start: 5734582
Stop: 5735100
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08251.1|AE004900_5 (AE004900) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 172/172 (100%), Positives = 172/172 (100%)
Sequence:
ATGAGCGCTTCGATCCGCGACGCCGGCGTCGCCGACCTGCCCGGCATCCTCGCCATCTACAACGACGCCGTG
GGCAATACCACGGCGATCTGGAACGAAACCCCGGTGGACCTGGCCAACCGCCAGGCCTGGTTCGACACCCGC
GCCCGCCAGGGCTACCCGATCCTGGTGGCGAGCGACGCCGCCGGCGAAGTGCTCGGCTACGCCTCCTACGGC
GACTGGCGACCCTTCGAGGGCTTCCGCGGCACCGTCGAGCACTCCGTCTACGTGCGCGACGACCAGCGCGGC
AAAGGCCTCGGCGTGCAACTGCTACAGGCGCTGATCGAACGTGCGCGGGCCCAGGGCCTGCACGTCATGGTG
GCCGCCATCGAAAGCGGCAATGCCGCTTCGATCGGCCTGCACCGGCGCCTCGGCTTCGAGATCAGCGGGCAG
ATGCCGCAGGTGGGCCAGAAGTTCGGCCGCTGGCTCGACCTGACCTTCATGCAACTGAACCTCGACCCGACG
CGCAGCGCGCCCTGA
Translation:
MSASIRDAGVADLPGILAIYNDAVGNTTAIWNETPVDLANRQAWFDTRARQGYPILVASDAAGEVLGYASYG
DWRPFEGFRGTVEHSVYVRDDQRGKGLGVQLLQALIERARAQGLHVMVAAIESGNAASIGLHRRLGFEISGQ
MPQVGQKFGRWLDLTFMQLNLDPTRSAP*
AnnotationID:4192GeneID:4185
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 11:11:21
Gene Name:
Confidence Code:3
GeneProduct:putative phosphinothricin N-acetyltransferase
Cell Localization:()
Synonyms:yncA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1247
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58321.1| (AE016873) phosphinothricin N-acetyltransferase, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 180

 Score =  261 bits (668), Expect = 1e-69
 Identities = 130/172 (75%), Positives = 143/172 (83%)

>gb|AAN70415.1|AE016683_6 (AE016792) phosphinothricin N-acetyltransferase, putative
           [Pseudomonas putida KT2440]
          Length = 171

 Score =  256 bits (655), Expect = 3e-68
 Identities = 130/167 (77%), Positives = 140/167 (83%), Gaps = 1/167 (0%)

>emb|CAC46141.1| (AL591787) PUTATIVE ACETYLTRANSFERASE (ANTIBIOTIC RESISTANCE )
           PROTEIN [Sinorhizobium meliloti]
          Length = 169

 Score =  212 bits (539), Expect = 9e-55
 Identities = 104/161 (64%), Positives = 120/161 (74%)






 
Structural Features:
COG1247, COG1247, Sortase and related acyltransferases 
[Cell envelope biogenesis, outer membrane]
CD-Length = 169 residues, 100.0% aligned
Score =  221 bits (565), Expect = 3e-59
Identities = 94/169 (55%), Positives = 109/169 (64%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8372




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25513




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35194




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4185_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4185
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6458
                           PA4866_tr
                           translation of PA4866
                           172
                           99.99
                           99.99
                           0
                           892.0
     

     
     
176281
                           gb|AAG08251.1|AE004900_5
                           (AE004900) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           172
                           99.99
                           99.99
                           0
                           892.0
     

     
     
176283
                           gb|AAN70415.1|AE016683_6
                           (AE016792) phosphinothricin N-acetyltransferase, putative [Pseudomonas putida KT2440]
                           172
                           75.58
                           81.39
                           1
                           652.0
     

     
     
176282
                           gb|AAO58321.1|
                           (AE016873) phosphinothricin N-acetyltransferase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           180
                           72.22
                           79.44
                           8
                           668.0
     

     
     
176284
                           emb|CAC46141.1|
                           (AL591787) PUTATIVE ACETYLTRANSFERASE (ANTIBIOTIC RESISTANCE ) PROTEIN [Sinorhizobium meliloti]
                           173
                           60.69
                           70.52
                           5
                           533.0
     

     






      

          
GC ORFID: 47187How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4866Glimmer Score: 

          
Start: 4998263Stop: 4998781

          
Length: 519


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4866 translation of PA4866Homolog Bit Score 348.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5804 (ORF: BLASTX 261.0), psyr_15may02_Scaffold6_revised_gene6716 (ORF: BLASTX 108.0), t_PA4866 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCTTCGATCCGCGACGCCGGCGTCGCCGACCTGCCCGGCATCCTCGCCATCTACAACGACGCCGTG 
GGCAATACCACGGCGATCTGGAACGAAACCCCGGTGGACCTGGCCAACCGCCAGGCCTGGTTCGACACCCGC 
GCCCGCCAGGGCTACCCGATCCTGGTGGCGAGCGACGCCGCCGGCGAAGTGCTCGGCTACGCCTCCTACGGC 
GACTGGCGACCCTTCGAGGGCTTCCGCGGCACCGTCGAGCACTCCGTCTACGTGCGCGACGACCAGCGCGGC 
AAAGGCCTCGGCGTGCAACTGCTACAGGCGCTGATCGAACGTGCGCGGGCCCAGGGCCTGCACGTCATGGTG 
GCCGCCATCGAAAGCGGCAATGCCGCTTCGATCGGCCTGCACCGGCGCCTCGGCTTCGAGATCAGCGGGCAG 
ATGCCGCAGGTGGGCCAGAAGTTCGGCCGCTGGCTCGACCTGACCTTCATGCAACTGAACCTCGACCCGACG 
CGCAGCGCGCCCTGA