ViewGene

Locus Name:
GeneID:
Location:

GeneID:4184
TrivialName: PA14_61520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61520
PAO1 Ortholog Locus:PA4650
Sequence Length:543
Protein Length:180
Start: 5488143
Stop: 5488685
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08037.1|AE004879_3 (AE004879) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 177/180 (98%), Positives = 179/180 (99%)
Sequence:
ATGCCGATGTCCAGCCGGCGTCTACTCCTGTCGCTTCTCCTGCTCCCGCTGCCGAGCCTGGTCGCGCATGCC
GATCCATCGCCGATCAGCCGCGCCTTCCAGGTCCAGGCGGTGGTCGCCAACGGCTGCGCCTTCGGCACCGCC
ATCAGCAACAACGCCTATGACCTCGGCACCCTGAGCTTCGGCACCCTCGGCAACCTGGCCAGTCCGGTTAAC
GTCGCCAGCAGCTCCGGGGCCGGCTCCATCGTCCTGACCTGCACTCCGGGAATGACCGTCTCCGTCGCCCTC
GACTACGGGGTCAATGGCGGCAGCAGCAACCAGCGCTACCTGAAGCGGGTGAGCGGTAACGAGACCCTCGCC
TACCAGCTCTACCAGGATGCCGCCTACTCCCAGGTCTGGGGCAACGGGGCGCTCGCGCGGACCATCGCCAAC
TTTCCCGCCAGCACCCAGACCTACACGGTATACGCGCGCCTGTTCGCGGTCGGCAGCCTGCCGTCCGCCGGC
AACTACCGCGACACCGTCACCGTCACCCTTTCGTTCTGA
Translation:
MPMSSRRLLLSLLLLPLPSLVAHADPSPISRAFQVQAVVANGCAFGTAISNNAYDLGTLSFGTLGNLASPVN
VASSSGAGSIVLTCTPGMTVSVALDYGVNGGSSNQRYLKRVSGNETLAYQLYQDAAYSQVWGNGALARTIAN
FPASTQTYTVYARLFAVGSLPSAGNYRDTVTVTLSF*
AnnotationID:4191GeneID:4184
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 05:05:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4650
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC90518.1| (AJ414150) putative exported protein [Yersinia pestis CO92]
          Length = 185

 Score =  106 bits (265), Expect = 6e-23
 Identities = 63/178 (35%), Positives = 102/178 (57%), Gaps = 7/178 (3%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:8370
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25511
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37586
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4184_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4184

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6457 PA4650_tr translation of PA4650 180 98.33 99.44 0 893.0
176280 gb|AAG08037.1|AE004879_3 (AE004879) hypothetical protein PA4650 [Pseudomonas aeruginosa PAO1] 180 98.33 99.44 0 893.0
GC ORFID: 47186How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4650Glimmer Score:
Start: 4751823Stop: 4752365
Length: 543
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4650 translation of PA4650Homolog Bit Score 348.0
Other Homologs: t_PA4650 (ORF: GLIMMER)
GC ORF Sequence
ATGCCGATGTCCAGCCGGCGTCTACTCCTGTCGCTTCTCCTGCTCCCGCTGCCGAGCCTGGTCGCGCATGCC
GATCCATCGCCGATCAGCCGCGCCTTCCAGGTCCAGGCGGTGGTCGCCAACGGCTGCGCCTTCGGCACCGCC
ATCAGCAACAACGCCTATGACCTCGGCACCCTGAGCTTCGGCACCCTCGGCAACCTGGCCAGTCCGGTTAAC
GTCGCCAGCAGCTCCGGGGCCGGCTCCATCGTCCTGACCTGCACTCCGGGAATGACCGTCTCCGTCGCCCTC
GACTACGGGGTCAATGGCGGCAGCAGCAACCAGCGCTACCTGAAGCGGGTGAGCGGTAACGAGACCCTCGCC
TACCAGCTCTACCAGGATGCCGCCTACTCCCAGGTCTGGGGCAACGGGGCGCTCGCGCGGACCATCGCCAAC
TTTCCCGCCAGCACCCAGACCTACACGGTATACGCGCGCCTGTTCGCGGTCGGCAGCCTGCCGTCCGCCGGC
AACTACCGCGACACCGTCACCGTCACCCTTTCGTTCTGA