ViewGene
Locus Name:
GeneID:
Location:

GeneID:4183
TrivialName: PA14_57900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57900
PAO1 Ortholog Locus:PA4458
Sequence Length:540
Protein Length:179
Start: 5153876
Stop: 5154415
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07846.1|AE004860_2 (AE004860) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 177/179 (98%), Positives = 177/179 (98%)
Sequence:
ATGAGCGATACCCATTCGGCCGCGGAACTCCCGGTCCGGGCCCGCCGGATACGCCTGGCGATCTTCGACGTC
GACGGCGTGCTGACCGACGGCAAGCTGTATTTCCTCGTCGACGGCAGCGAGTTCAAGACCTTCAACACCCTG
GACGGACATGGCATCAAGATGCTCATCGCCTCCGGCGTGCGCACCGCCATCATCACCGGCCGCGACACTCCG
GTGGTCGAACGGCGCGCGCGCAACCTGGGCATCCAGCACCTCTATCAGGGCCGGGAAGACAAGCTCGCCGTC
CTCGACGAACTTCTCGGCGAACTCGGACTAGGCTATGAGCAAGTCGCCTACCTTGGCGACGACCTGCCCGAT
CTGCCGGTGATCCGCCGCGTCGGCCTGGGCATGGCGGTAGCCAGTGCCGACCCGTTCGTGCGCCAGCATGCC
CATGGCGTCACCGCGGCCCGCGGCGGCGAAGGCGCCGCCCGCGAGTTCTGCGAACTGATCATGCGCGCCCAG
GGTACGCTCGAAGCCGCCCAGGGCGCCTATCTGTAG
Translation:
MSDTHSAAELPVRARRIRLAIFDVDGVLTDGKLYFLVDGSEFKTFNTLDGHGIKMLIASGVRTAIITGRDTP
VVERRARNLGIQHLYQGREDKLAVLDELLGELGLGYEQVAYLGDDLPDLPVIRRVGLGMAVASADPFVRQHA
HGVTAARGGEGAAREFCELIMRAQGTLEAAQGAYL*
AnnotationID:4190GeneID:4183
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 06:06:32
Gene Name:
Confidence Code:3
GeneProduct:putative phophatase
Cell Localization:()
Synonyms:PA4458
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1778
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66581.1|AE016286_5 (AE016777) phosphatase, YrbI family [Pseudomonas putida KT2440]
          Length = 174

 Score =  277 bits (709), Expect = 2e-74
 Identities = 139/171 (81%), Positives = 152/171 (88%)

>gb|AAO57898.1| (AE016872) phosphatase, YrbI family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 179

 Score =  266 bits (680), Expect = 4e-71
 Identities = 133/171 (77%), Positives = 149/171 (87%)

>gb|AAL22185.1| (AE008852) putative protein of HAD superfamily [Salmonella
           typhimurium LT2]
          Length = 188

 Score =  159 bits (402), Expect = 7e-39
 Identities = 82/164 (50%), Positives = 106/164 (64%)






 
Structural Features:
COG1778, Low specificity phosphatase (HAD superfamily) 
CD-Length = 170 residues, 100.0% aligned
Score =  247 bits (631), Expect = 2e-66
Identities = 103/170 (60%), Positives = 132/170 (77%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8368




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25509




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31497




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4183_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4183
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6456
                           PA4458_tr
                           translation of PA4458
                           179
                           98.88
                           98.88
                           0
                           893.0
     

     
     
176238
                           gb|AAG07846.1|AE004860_2
                           (AE004860) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           179
                           98.88
                           98.88
                           0
                           893.0
     

     
     
176239
                           emb|CAD43108.1|
                           (AJ496594) hypothetical protein [Pseudomonas stutzeri]
                           179
                           84.91
                           87.15
                           5
                           755.0
     

     
     
176240
                           gb|AAN66581.1|AE016286_5
                           (AE016777) phosphatase, YrbI family [Pseudomonas putida KT2440]
                           179
                           77.65
                           84.91
                           5
                           705.0
     

     
     
176241
                           gb|AAO57898.1|
                           (AE016872) phosphatase, YrbI family [Pseudomonas syringae pv. tomato str. DC3000]
                           179
                           74.86
                           83.79
                           0
                           679.0
     

     






      

          
GC ORFID: 47185How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4458Glimmer Score: 

          
Start: 4417555Stop: 4418094

          
Length: 540


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4458 translation of PA4458Homolog Bit Score 348.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5543 (ORF: BLASTX 267.0), t_PA4458 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGATACCCATTCGGCCGCGGAACTCCCGGTCCGGGCCCGCCGGATACGCCTGGCGATCTTCGACGTC 
GACGGCGTGCTGACCGACGGCAAGCTGTATTTCCTCGTCGACGGCAGCGAGTTCAAGACCTTCAACACCCTG 
GACGGACATGGCATCAAGATGCTCATCGCCTCCGGCGTGCGCACCGCCATCATCACCGGCCGCGACACTCCG 
GTGGTCGAACGGCGCGCGCGCAACCTGGGCATCCAGCACCTCTATCAGGGCCGGGAAGACAAGCTCGCCGTC 
CTCGACGAACTTCTCGGCGAACTCGGACTAGGCTATGAGCAAGTCGCCTACCTTGGCGACGACCTGCCCGAT 
CTGCCGGTGATCCGCCGCGTCGGCCTGGGCATGGCGGTAGCCAGTGCCGACCCGTTCGTGCGCCAGCATGCC 
CATGGCGTCACCGCGGCCCGCGGCGGCGAAGGCGCCGCCCGCGAGTTCTGCGAACTGATCATGCGCGCCCAG 
GGTACGCTCGAAGCCGCCCAGGGCGCCTATCTGTAG