ViewGene
Locus Name:
GeneID:
Location:

GeneID:4182
TrivialName: PA14_18060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18060
PAO1 Ortholog Locus:PA3575
Sequence Length:531
Protein Length:176
Start: 1550622
Stop: 1550092
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06963.1|AE004778_7 (AE004778) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 174/176 (98%), Positives = 175/176 (99%)
Sequence:
ATGTCCATCCGCCGCTATTCCCCGTCACAGATCGCCCTGCACTGGCTCAGCGCCGTCGCGGTCCTGCTGATC
ATCGCCCTGCCCTACGGCGCCGACTTCTTCGCCGGCCTGCTCGGCGGCAAGGGCAACGTCTTCACCCTGCAC
AAGTCGCTGGGCGTGGCGGTACTCCTGCTGACCCTGACACGCCTGGCGCTGCGCCGCGTCCAGGGTGTCCCG
GATACCCTGGAGGGGAACCCGGACTGGCAGCGCGCGGCCGCCAAGGCCGGGCATTTCCTGCTGTACGCGGTG
CTGATCGTCATGCCGCTCTCCGGCATGCTCGCCGGCAAGCGTCCGCTGGACCTGTTCTGGCTGGTGCAGATC
GGCCCGTTCGACCTGCCGGAAGCCTTCAAGGCGTTCGCCGGCGGCACCCACGTCACCGTCCAGTACCTGCTT
TTCGCGCTGATCCTCGGCCACGCCGCCGCGGCCATCTGGCACCACCGCGTGCAGAAGGACGACGTACTGCGC
GCCATGCTGCCGCAACGCGGCGCCTGA
Translation:
MSIRRYSPSQIALHWLSAVAVLLIIALPYGADFFAGLLGGKGNVFTLHKSLGVAVLLLTLTRLALRRVQGVP
DTLEGNPDWQRAAAKAGHFLLYAVLIVMPLSGMLAGKRPLDLFWLVQIGPFDLPEAFKAFAGGTHVTVQYLL
FALILGHAAAAIWHHRVQKDDVLRAMLPQRGA*
AnnotationID:4189GeneID:4182
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 08:08:08
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome B561
Cell Localization:()
Synonyms:PA3575
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3038,pfam01292
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM42122.1| (AE012398) cytochrome B561 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 187

 Score =  103 bits (257), Expect = 5e-22
 Identities = 65/184 (35%), Positives = 92/184 (50%), Gaps = 20/184 (10%)

>dbj|BAB36135.1| (AP002559) putative cytochrome [Escherichia coli O157:H7]
          Length = 186

 Score = 87.0 bits (214), Expect = 5e-17
 Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 11/179 (6%)








 
Structural Features:
COG3038, CybB, Cytochrome B561 [Energy production and conversion]
CD-Length = 181 residues,  98.3% aligned
Score =  148 bits (374), Expect = 9e-37
Identities = 75/178 (42%), Positives = 98/178 (55%), Gaps = 4/178 (2%)

pfam01292, Ni_hydr_CYTB, Cytochrome b561 family.
CD-Length = 174 residues, 100.0% aligned
Score =  131 bits (331), Expect = 9e-32
Identities = 62/174 (35%), Positives = 76/174 (43%), Gaps = 3/174 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8366




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25507




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31965




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4182_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4182
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6455
                           PA3575_tr
                           translation of PA3575
                           176
                           98.86
                           99.43
                           0
                           894.0
     

     
     
176237
                           gb|AAG06963.1|AE004778_7
                           (AE004778) hypothetical protein PA3575 [Pseudomonas aeruginosa PAO1]
                           176
                           98.86
                           99.43
                           0
                           894.0
     

     






      

          
GC ORFID: 47184How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3575Glimmer Score: 

          
Start: 3403314Stop: 3403844

          
Length: 531


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3575 translation of PA3575Homolog Bit Score 348.0

          
Other Homologs:  t_PA3575 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCATCCGCCGCTATTCCCCGTCACAGATCGCCCTGCACTGGCTCAGCGCCGTCGCGGTCCTGCTGATC 
ATCGCCCTGCCCTACGGCGCCGACTTCTTCGCCGGCCTGCTCGGCGGCAAGGGCAACGTCTTCACCCTGCAC 
AAGTCGCTGGGCGTGGCGGTACTCCTGCTGACCCTGACACGCCTGGCGCTGCGCCGCGTCCAGGGTGTCCCG 
GATACCCTGGAGGGGAACCCGGACTGGCAGCGCGCGGCCGCCAAGGCCGGGCATTTCCTGCTGTACGCGGTG 
CTGATCGTCATGCCGCTCTCCGGCATGCTCGCCGGCAAGCGTCCGCTGGACCTGTTCTGGCTGGTGCAGATC 
GGCCCGTTCGACCTGCCGGAAGCCTTCAAGGCGTTCGCCGGCGGCACCCACGTCACCGTCCAGTACCTGCTT 
TTCGCGCTGATCCTCGGCCACGCCGCCGCGGCCATCTGGCACCACCGCGTGCAGAAGGACGACGTACTGCGC 
GCCATGCTGCCGCAACGCGGCGCCTGA