ViewGene
Locus Name:
GeneID:
Location:

GeneID:4180
TrivialName: PA14_30710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30710
PAO1 Ortholog Locus:PA2582
Sequence Length:534
Protein Length:177
Start: 2664213
Stop: 2664746
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05970.1|AE004686_8 (AE004686) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 176/177 (99%), Positives = 176/177 (99%)
Sequence:
ATGGGTTTTGAACAACTTGCCGAGCTGAGAGACCGTCTGCGCGCACAGGCGGCGCAGGCGAAACCGGCTCAA
ACCAAAAGCTCCGCGGGACGCGCGAAGAAACGTGAAGCCGTCGAGCCGGGAGTCGAGGCTATCTGGAGGCTG
CAACGGCATTTCCCGCTGGCGTTTCCGAAAAGCCCCGCGGCCAAGGTTCCGCTCAAGCAGGGCATCCTCCAG
GATGCGCAGCAGCACCTCGAGCTACTGGGAATCACCGCCGAACAACTGAAACAGGCCATCGCCACCTGGTGC
CAGGGCAGCCGCTACTGGAGTTGCATGGTGGAAGATGCGCCGCGGCTGGATCTGCAAGGCCAGGTTGCCGGC
AAGGTAACCGCCGAGCAGGCGGTGTATGCGCGGCGGCAGGCGTCTCGCCGGCAGCGCGAGCAGATGCGCGAG
AAGCGCGCCAAGCGTGCCCAGGCAGGTAGCGAAGCGCCGGCCGCCACGGAGGCGCCGACGCCTGAAGCGCCC
GCAACCGAAGCGAGTCCCGAGGCGAACTGA
Translation:
MGFEQLAELRDRLRAQAAQAKPAQTKSSAGRAKKREAVEPGVEAIWRLQRHFPLAFPKSPAAKVPLKQGILQ
DAQQHLELLGITAEQLKQAIATWCQGSRYWSCMVEDAPRLDLQGQVAGKVTAEQAVYARRQASRRQREQMRE
KRAKRAQAGSEAPAATEAPTPEAPATEASPEAN*
AnnotationID:4187GeneID:4180
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 08:08:45
Gene Name:
Confidence Code:3
GeneProduct:putative activator of osmoprotectant transporter
Cell Localization:()
Synonyms:PA2582
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04352
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam04352, ProQ, ProQ activator of osmoprotectant transporter ProP. 
CD-Length = 152 residues, 100.0% aligned
Score =  130 bits (327), Expect = 1e-31
Identities = 65/153 (42%), Positives = 81/153 (52%), Gaps = 9/153 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8362




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25503




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33138




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4180_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4180
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6453
                           PA2582_tr
                           translation of PA2582
                           177
                           99.43
                           99.43
                           0
                           892.0
     

     
     
176206
                           gb|AAG05970.1|AE004686_8
                           (AE004686) hypothetical protein PA2582 [Pseudomonas aeruginosa PAO1]
                           177
                           99.43
                           99.43
                           0
                           892.0
     

     
     
176207
                           gb|AAN67795.1|AE016410_11
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           183
                           58.46
                           71.03
                           18
                           503.0
     

     
     
176208
                           gb|AAN62298.1|AF440524_85
                           (AF440524) conserved hypothetical protein [Pseudomonas aeruginosa]
                           180
                           51.66
                           64.44
                           14
                           456.0
     

     






      

          
GC ORFID: 47182How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2582Glimmer Score: 

          
Start: 2289713Stop: 2289180

          
Length: 534


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2582 translation of PA2582Homolog Bit Score 348.0

          
Other Homologs:  t_PA2582 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTTTTGAACAACTTGCCGAGCTGAGAGACCGTCTGCGCGCACAGGCGGCGCAGGCGAAACCGGCTCAA 
ACCAAAAGCTCCGCGGGACGCGCGAAGAAACGTGAAGCCGTCGAGCCGGGAGTCGAGGCTATCTGGAGGCTG 
CAACGGCATTTCCCGCTGGCGTTTCCGAAAAGCCCCGCGGCCAAGGTTCCGCTCAAGCAGGGCATCCTCCAG 
GATGCGCAGCAGCACCTCGAGCTACTGGGAATCACCGCCGAACAACTGAAACAGGCCATCGCCACCTGGTGC 
CAGGGCAGCCGCTACTGGAGTTGCATGGTGGAAGATGCGCCGCGGCTGGATCTGCAAGGCCAGGTTGCCGGC 
AAGGTAACCGCCGAGCAGGCGGTGTATGCGCGGCGGCAGGCGTCTCGCCGGCAGCGCGAGCAGATGCGCGAG 
AAGCGCGCCAAGCGTGCCCAGGCAGGTAGCGAAGCGCCGGCCGCCACGGAGGCGCCGACGCCTGAAGCGCCC 
GCAACCGAAGCGAGTCCCGAGGCGAACTGA