ViewGene

Locus Name:
GeneID:
Location:

GeneID:418
TrivialName: PA14_03000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03000
PAO1 Ortholog Locus:PA0242
Sequence Length:1905
Protein Length:634
Start: 263577
Stop: 265481
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03631.1|AE004462_4 (AE004462) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 628/634 (99%), Positives = 630/634 (99%)
Sequence:
ATGCAGCGTTCGATCGCCACCGTATCCCTGAGCGGCACCCTGCCGGAAAAGCTCGAGGCCATCGCCGCCACC
GGTTTCGACGGGGTGGAAATCTTCGAGAACGACCTGCTTCATTACGACGGCAGCCCGCGCGACGTACGCCGG
CTGTGTGCCGACCTGGGCCTGGAGATCCTGCTGTTCCAGCCGTTCCGCGACTTCGAGGGCTGCCGCCGGGAA
CGCCTGGGGCGAAACCTGGAGCGCGCCGAACGCAAGTTCGACCTGATGCAGGAGCTCGGCACCGACCTAATG
CTGGTGTGCAGCAACGTCGCTGCCGATGCCCTCGGCGAACCGGCGCTGCTGGCCGATGACCTCCGGCAGCTG
GCCGAGCGCGCCGCCGTCCGCGGCCTGCGCATCGGCTACGAGGCGCTGGCCTGGGGGCGCCAGGTGAACACC
TGGGAGCAGGCCTGGGACCTGGTGCGGCGGGCCGACCAGGCGAACCTCGGGCTGATCCTCGACAGCTTCCAT
ACCCTTTCGCTGGACGGCGATCCGCGCGGCATCGCCGATCTTCCGGGGGAAAAGATCTTCTTCGTGCAGATG
GCCGACGCGCCCTTGCTGGCAATGGACGTGCTGGAATGGAGCCGGCACTTCCGCTGCTTCCCGGGTCAGGGC
GGCTTCGACCTGGCAGGCTTCCTCGCGCCGGTCGTCGCGTCCGGCTATCGCGGTCCGCTGTCGCTGGAGGTC
TTCAACGACGGCTTCCGCGCCGCGCCGACCCGCGCCAACGCCGTCGACGGCCTGCGCTCGCTGCTCTACCTC
GAGGAGAAGACCCGCGAGCGCCTGCAACGCCAGACGCCGCACGTGGCGGTGGACGAGCTGTTCGCGCCGCCG
CCGGCGAGCCTCTGCGACGGCATCGAGTTCCTCGAGTTCGCCGTCGACGAGACGCTCGGCGCGCGCCTTGGC
CAGTGGTTGCAGCGACTGGGCTTCGCCAGGGCCGGCGAGCACCGTTCGAAGAATGTCAGCCTGTTGCGCCAG
GGCGACATCAACCTGGTACTGAACGCCGAGCCCTATTCCTTCGCCCACGGTTTCTTCGAGGCCCACGGACCG
TCCTTGTGCGCCACCGCGCTGCGCGTGCGTGACGCCGGCCAGGCGCTGGGGCGCGCTCGTGCGTACGGAGGC
CAGCCGTACCGCGGACTGCTCGGCCCCAACGAGCGGGAAATCCCGGCGGTGCGCGCCCTCGACGGCAGCCTG
CTGTATCTGGTCGAGCAGCACACCGAGGGCCGCAGCATCTACGACAGCGACTTCGTGACGAACGACGCCGAC
ACCTCCGGCCTCGGCCTGCGACGCGTCGACCACGTGGCCCTGGCGCTGCCCGCCGAAGGCCTGGACAGCTGG
GTGCTGTTCTACAAGAGCCTGTTCGACTTCGGCGCCGATGACGAGGTGGTGCTGCCCGACCCCTATGGCCTG
GTCACCAGCCGTGCCGTGCGTAGCCCCTGCGGCAGCGTGCGCCTGCCGCTGAACATTTCCGAGGACCGCAAC
ACCGCCATCGCCCGTTCGCTGTCCAGCTATCGCGGTTCCGGCGTGCATCACATCGCCTTCGATTGCGCCGAC
ATCTTCGCCGCCGTGGCCCAGGCCAAGGAGGCCGGGGTCGCACTGCTGGAAATCCCGCTGAACTATTACGAC
GACCTCGCCGCGCGCTTCGACTTCGACGACGAGTTCCTCAGCGAACTGGCCTACTACAACGTCCTCTACGAC
CGCGACGCCCAGGGCGGCGAGCTGTTCCATGTGTTCACCGAGCCGTTCGAGGAGCGCTTCTTCTTCGAGATC
CTCCAGCGCCGCCACGGCTACGCCGGCTACGGCGCGGCCAACGTGCCGGTGCGCCTGGCGGCGATGGCGCAA
GCGCGGCGGGGTGTGCGCCGGGTCAAGCTGTGA
Translation:
MQRSIATVSLSGTLPEKLEAIAATGFDGVEIFENDLLHYDGSPRDVRRLCADLGLEILLFQPFRDFEGCRRE
RLGRNLERAERKFDLMQELGTDLMLVCSNVAADALGEPALLADDLRQLAERAAVRGLRIGYEALAWGRQVNT
WEQAWDLVRRADQANLGLILDSFHTLSLDGDPRGIADLPGEKIFFVQMADAPLLAMDVLEWSRHFRCFPGQG
GFDLAGFLAPVVASGYRGPLSLEVFNDGFRAAPTRANAVDGLRSLLYLEEKTRERLQRQTPHVAVDELFAPP
PASLCDGIEFLEFAVDETLGARLGQWLQRLGFARAGEHRSKNVSLLRQGDINLVLNAEPYSFAHGFFEAHGP
SLCATALRVRDAGQALGRARAYGGQPYRGLLGPNEREIPAVRALDGSLLYLVEQHTEGRSIYDSDFVTNDAD
TSGLGLRRVDHVALALPAEGLDSWVLFYKSLFDFGADDEVVLPDPYGLVTSRAVRSPCGSVRLPLNISEDRN
TAIARSLSSYRGSGVHHIAFDCADIFAAVAQAKEAGVALLEIPLNYYDDLAARFDFDDEFLSELAYYNVLYD
RDAQGGELFHVFTEPFEERFFFEILQRRHGYAGYGAANVPVRLAAMAQARRGVRRVKL*
AnnotationID:427GeneID:418
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 19:07:59
Gene Name:
Confidence Code:3
GeneProduct:putative 4-hydroxyphenylpyruvate dioxygenase
Cell Localization:()
Synonyms:PA0242
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative hemolysin
Functional Category Confidence Code:5
COGs:COG3185
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68163.1|AE016448_1 (AE016783) 4-hydroxyphenylpyruvate dioxygenase, putative
           [Pseudomonas putida KT2440]
          Length = 635

 Score = 1009 bits (2610), Expect = 0.0
 Identities = 498/631 (78%), Positives = 554/631 (87%)

>gb|AAO55858.1| (AE016864) 4-hydroxyphenylpyruvate dioxygenase, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 635

 Score =  986 bits (2550), Expect = 0.0
 Identities = 485/631 (76%), Positives = 548/631 (86%)

Structural Features:
COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
[Amino acid transport and metabolism]
CD-Length = 363 residues,  99.2% aligned
Score =  436 bits (1123), Expect = 4e-123
Identities = 179/365 (49%), Positives = 215/365 (58%), Gaps = 9/365 (2%)
Genomic Context:
Comment:
ReferenceID:839
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17981
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33596
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:418_cdd.html
URL:
Homologs By Global Alignment
Gene ID:418

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
708 PA0242_tr translation of PA0242 634 99.05 99.36 0 3245.0
31790 gb|AAG03631.1|AE004462_4 (AE004462) hypothetical protein PA0242 [Pseudomonas aeruginosa PAO1] 634 99.05 99.36 0 3245.0
31791 gb|AAN68163.1|AE016448_1 (AE016783) 4-hydroxyphenylpyruvate dioxygenase, putative [Pseudomonas putida KT2440] 636 78.61 87.57 3 2610.0
31792 gb|AAO55858.1| (AE016864) 4-hydroxyphenylpyruvate dioxygenase, putative [Pseudomonas syringae pv. tomato str. DC3000] 636 77.04 87.10 3 2552.0
31793 emb|CAD18551.1| (AL646084) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 649 53.00 64.86 38 1615.0
GC ORFID: 43420How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0242Glimmer Score:
Start: 6064918Stop: 6066822
Length: 1905
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0242 translation of PA0242Homolog Bit Score 1254.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1101 (ORF: BLASTX 986.0), t_PA0242 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGCGTTCGATCGCCACCGTATCCCTGAGCGGCACCCTGCCGGAAAAGCTCGAGGCCATCGCCGCCACC
GGTTTCGACGGGGTGGAAATCTTCGAGAACGACCTGCTTCATTACGACGGCAGCCCGCGCGACGTACGCCGG
CTGTGTGCCGACCTGGGCCTGGAGATCCTGCTGTTCCAGCCGTTCCGCGACTTCGAGGGCTGCCGCCGGGAA
CGCCTGGGGCGAAACCTGGAGCGCGCCGAACGCAAGTTCGACCTGATGCAGGAGCTCGGCACCGACCTAATG
CTGGTGTGCAGCAACGTCGCTGCCGATGCCCTCGGCGAACCGGCGCTGCTGGCCGATGACCTCCGGCAGCTG
GCCGAGCGCGCCGCCGTCCGCGGCCTGCGCATCGGCTACGAGGCGCTGGCCTGGGGGCGCCAGGTGAACACC
TGGGAGCAGGCCTGGGACCTGGTGCGGCGGGCCGACCAGGCGAACCTCGGGCTGATCCTCGACAGCTTCCAT
ACCCTTTCGCTGGACGGCGATCCGCGCGGCATCGCCGATCTTCCGGGGGAAAAGATCTTCTTCGTGCAGATG
GCCGACGCGCCCTTGCTGGCAATGGACGTGCTGGAATGGAGCCGGCACTTCCGCTGCTTCCCGGGTCAGGGC
GGCTTCGACCTGGCAGGCTTCCTCGCGCCGGTCGTCGCGTCCGGCTATCGCGGTCCGCTGTCGCTGGAGGTC
TTCAACGACGGCTTCCGCGCCGCGCCGACCCGCGCCAACGCCGTCGACGGCCTGCGCTCGCTGCTCTACCTC
GAGGAGAAGACCCGCGAGCGCCTGCAACGCCAGACGCCGCACGTGGCGGTGGACGAGCTGTTCGCGCCGCCG
CCGGCGAGCCTCTGCGACGGCATCGAGTTCCTCGAGTTCGCCGTCGACGAGACGCTCGGCGCGCGCCTTGGC
CAGTGGTTGCAGCGACTGGGCTTCGCCAGGGCCGGCGAGCACCGTTCGAAGAATGTCAGCCTGTTGCGCCAG
GGCGACATCAACCTGGTACTGAACGCCGAGCCCTATTCCTTCGCCCACGGTTTCTTCGAGGCCCACGGACCG
TCCTTGTGCGCCACCGCGCTGCGCGTGCGTGACGCCGGCCAGGCGCTGGGGCGCGCTCGTGCGTACGGAGGC
CAGCCGTACCGCGGACTGCTCGGCCCCAACGAGCGGGAAATCCCGGCGGTGCGCGCCCTCGACGGCAGCCTG
CTGTATCTGGTCGAGCAGCACACCGAGGGCCGCAGCATCTACGACAGCGACTTCGTGACGAACGACGCCGAC
ACCTCCGGCCTCGGCCTGCGACGCGTCGACCACGTGGCCCTGGCGCTGCCCGCCGAAGGCCTGGACAGCTGG
GTGCTGTTCTACAAGAGCCTGTTCGACTTCGGCGCCGATGACGAGGTGGTGCTGCCCGACCCCTATGGCCTG
GTCACCAGCCGTGCCGTGCGTAGCCCCTGCGGCAGCGTGCGCCTGCCGCTGAACATTTCCGAGGACCGCAAC
ACCGCCATCGCCCGTTCGCTGTCCAGCTATCGCGGTTCCGGCGTGCATCACATCGCCTTCGATTGCGCCGAC
ATCTTCGCCGCCGTGGCCCAGGCCAAGGAGGCCGGGGTCGCACTGCTGGAAATCCCGCTGAACTATTACGAC
GACCTCGCCGCGCGCTTCGACTTCGACGACGAGTTCCTCAGCGAACTGGCCTACTACAACGTCCTCTACGAC
CGCGACGCCCAGGGCGGCGAGCTGTTCCATGTGTTCACCGAGCCGTTCGAGGAGCGCTTCTTCTTCGAGATC
CTCCAGCGCCGCCACGGCTACGCCGGCTACGGCGCGGCCAACGTGCCGGTGCGCCTGGCGGCGATGGCGCAA
GCGCGGCGGGGTGTGCGCCGGGTCAAGCTGTGA