ViewGene
Locus Name:
GeneID:
Location:

GeneID:4179
TrivialName: PA14_31440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31440
PAO1 Ortholog Locus:PA2559
Sequence Length:543
Protein Length:180
Start: 2733563
Stop: 2734105
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05947.1|AE004684_2 (AE004684) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 179/180 (99%), Positives = 179/180 (99%)
Sequence:
ATGAGAAGCAAGGCGTCCGGCTTGGCGCTGGTGGTAGTGGCGGGGCTTGTGGCGGGTTGCGCCAGCAGTGGC
TATCAGCCCGAGGTCGACTGGCCGGCCGGCTGGCAGGTGATCACCGAGAGCATCCCACCCGAGGCCCGCGAC
GTGGAGCAACTGGGCTCCCGGCAACTGGCGACCAAGCTCggGcCggGAGGCGAGAAGGAAGCCAGCATCGAG
TtgCTCAGcctgAAGATGATGGAAGAGGAGTCGGTGGAGATCGACGGCCAGTTCCAGAGTGTCTTCGATGTC
GTCCAATCGGGCTaccgCaAGGCCGGGCTGGGCTCGCGCTGCACCACGccgATCCGCTCGAACCTCGGCGGC
CTGGCATCGCTGGAGACCCACTGCCGGATCAGCCAGGGCAACGAGGTGCTGCTGACCCAGATCGTGGCGATG
GCCCTGGGACAGCGCGCGATGTACTCCCTGGTATATACCGCCAGTCCGGCCAACAGCGTGGTCTACCGGCAG
AGCTACCTGCGCACCCGGGCCAGCCTGGTCCTGCGCTGA
Translation:
MRSKASGLALVVVAGLVAGCASSGYQPEVDWPAGWQVITESIPPEARDVEQLGSRQLATKLGPGGEKEASIE
LLSLKMMEEESVEIDGQFQSVFDVVQSGYRKAGLGSRCTTPIRSNLGGLASLETHCRISQGNEVLLTQIVAM
ALGQRAMYSLVYTASPANSVVYRQSYLRTRASLVLR*
AnnotationID:4186GeneID:4179
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 06:06:03
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2559
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8360




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25501




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4179
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6452
                           PA2559_tr
                           translation of PA2559
                           180
                           99.44
                           99.44
                           0
                           892.0
     

     
     
176205
                           gb|AAG05947.1|AE004684_2
                           (AE004684) hypothetical protein PA2559 [Pseudomonas aeruginosa PAO1]
                           180
                           99.44
                           99.44
                           0
                           892.0
     

     






      

          
GC ORFID: 47181How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2559Glimmer Score: 

          
Start: 2220363Stop: 2219821

          
Length: 543


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2559 translation of PA2559Homolog Bit Score 348.0

          
Other Homologs:  t_PA2559 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGAAGCAAGGCGTCCGGCTTGGCGCTGGTGGTAGTGGCGGGGCTTGTGGCGGGTTGCGCCAGCAGTGGC 
TATCAGCCCGAGGTCGACTGGCCGGCCGGCTGGCAGGTGATCACCGAGAGCATCCCACCCGAGGCCCGCGAC 
GTGGAGCAACTGGGCTCCCGGCAACTGGCGACCAAGCTCggGcCggGAGGCGAGAAGGAAGCCAGCATCGAG 
TtgCTCAGcctgAAGATGATGGAAGAGGAGTCGGTGGAGATCGACGGCCAGTTCCAGAGTGTCTTCGATGTC 
GTCCAATCGGGCTaccgCaAGGCCGGGCTGGGCTCGCGCTGCACCACGccgATCCGCTCGAACCTCGGCGGC 
CTGGCATCGCTGGAGACCCACTGCCGGATCAGCCAGGGCAACGAGGTGCTGCTGACCCAGATCGTGGCGATG 
GCCCTGGGACAGCGCGCGATGTACTCCCTGGTATATACCGCCAGTCCGGCCAACAGCGTGGTCTACCGGCAG 
AGCTACCTGCGCACCCGGGCCAGCCTGGTCCTGCGCTGA