ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4178

TrivialName: PA14_32840

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_32840

PAO1 Ortholog Locus:

Sequence Length: 954

Protein Length: 317

Start: 2874218

Stop: 2873265

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05845.1|AE004673_5 (AE004673) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 181/311 (58%), Positives = 216/311 (69%), Gaps = 3/311 (0%)

Sequence:

CTGCGCCTCACTTCCGATAGCGTCGTCACAGTGGCCCTGCATCATGGTCGGGAATTGGTCTTCACCCTTTCA
GGTAGTAACTTCGTCCCACGCAATCCCGACCAGGGCCTGCTGGAAAAGAAGGGAAACGGCTGGGAATATCTG
TCCGCTGACAACGAGCGACTGGTCTTCGACAACGACGGAAGACTGCTTAGGCAAACGACCACCGCCTTAGGC
ACTCGCTACCTCGCCTATACAGCCAACGGAATCAACGTCGACGACGAGGCTGGCAACCGGCTCACCTTCTCC
GAGGACGGCAAACACCAGCCGACCAGTCTGCGTACACCCGACGGCCAGGTGACCTACAGCTATGACAGCCGC
CGCCTGACAGCAGTTACCCGTAGCAACGGAGAAGGCTCGCTGACGCGTCGCTATCACTACGAGGACAGTCGC
AACGGCAGCCTGCTCACCGGTATTACCGACGAACGCGGCGTGCGCTATGCCTCATGGCACTACGACAATCAG
GGCCGGGCAATCTCCAGCGAGCACGCCACTGGGGCGGAAAAGATCAGTCTCAGCCACCACGGCGGTTACTCC
ACGCGGGTCACCAACGAATACGGCAAGCAGGCCATCTATTATTTCCAAGTAGTCAATGGCAGCAGACGCATC
GTCGCCATCGAAGGCGAACCCTCTCCCAACTGCCCCAGCAGCAATTCCACCTTCACCTACGACGAACGCGGA
CTGCTCACCAGCAAACGCGACAACAACGGCAACCTGACCACCTACCAGTACAGCGCCCGTGGCCTGGAGACC
TCGCGCACCGAGGCCGCCGGCACTGCACAAGCGCGCACCATCACAACCGACTGGCACCCGACCCTGTTCCTC
CCGGTGCAGGTCAGCGAGCCCGGCCGGATCACCCGCTACCAGTACGACGCCGAGGGACGCAAGACCGGCGAG
ACCGTCACCACCCGCTGA

Translation:

MRLTSDSVVTVALHHGRELVFTLSGSNFVPRNPDQGLLEKKGNGWEYLSADNERLVFDNDGRLLRQTTTALG
TRYLAYTANGINVDDEAGNRLTFSEDGKHQPTSLRTPDGQVTYSYDSRRLTAVTRSNGEGSLTRRYHYEDSR
NGSLLTGITDERGVRYASWHYDNQGRAISSEHATGAEKISLSHHGGYSTRVTNEYGKQAIYYFQVVNGSRRI
VAIEGEPSPNCPSSNSTFTYDERGLLTSKRDNNGNLTTYQYSARGLETSRTEAAGTAQARTITTDWHPTLFL
PVQVSEPGRITRYQYDAEGRKTGETVTTR*

AnnotationID:4185 GeneID:4178

AnnotatorUID: danlee

Modification Date/Time: 2004-03-08 16:04:43

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

56% identical to PA2457 (adjacent GeneID = 4406 has 49.4% identity to PA2457).
One more match to PA2457 (59.1%) at GeneID = 4081 (which is adjacent 
to GeneID = 1501, a 40% match to PA2458).

Structural Features:

Genomic Context:

Comment:

ReferenceID:15038

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25500

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:4178

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6451 PA2457_tr translation of PA2457 334 55.98 67.36 25 886.0

176204 gb|AAG05845.1|AE004673_5 (AE004673) hypothetical protein PA2457 [Pseudomonas aeruginosa PAO1] 334 55.98 67.36 25 886.0

GC ORFID: `47180`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2457`	Glimmer Score:
Start: `2079706`	Stop: `2080659`
Length: `954`
Start Codon: `CTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2457 translation of PA2457`	Homolog Bit Score `348.0`
Other Homologs: `psyr_15may02_Scaffold7_revised_gene7451 (ORF: BLASTX 317.0), psyr_15may02_Scaffold7_revised_gene7450 (ORF: BLASTX 162.0), t_PA2457 (ORF: GLIMMER)`
GC ORF Sequence
CTGCGCCTCACTTCCGATAGCGTCGTCACAGTGGCCCTGCATCATGGTCGGGAATTGGTCTTCACCCTTTCA GGTAGTAACTTCGTCCCACGCAATCCCGACCAGGGCCTGCTGGAAAAGAAGGGAAACGGCTGGGAATATCTG TCCGCTGACAACGAGCGACTGGTCTTCGACAACGACGGAAGACTGCTTAGGCAAACGACCACCGCCTTAGGC ACTCGCTACCTCGCCTATACAGCCAACGGAATCAACGTCGACGACGAGGCTGGCAACCGGCTCACCTTCTCC GAGGACGGCAAACACCAGCCGACCAGTCTGCGTACACCCGACGGCCAGGTGACCTACAGCTATGACAGCCGC CGCCTGACAGCAGTTACCCGTAGCAACGGAGAAGGCTCGCTGACGCGTCGCTATCACTACGAGGACAGTCGC AACGGCAGCCTGCTCACCGGTATTACCGACGAACGCGGCGTGCGCTATGCCTCATGGCACTACGACAATCAG GGCCGGGCAATCTCCAGCGAGCACGCCACTGGGGCGGAAAAGATCAGTCTCAGCCACCACGGCGGTTACTCC ACGCGGGTCACCAACGAATACGGCAAGCAGGCCATCTATTATTTCCAAGTAGTCAATGGCAGCAGACGCATC GTCGCCATCGAAGGCGAACCCTCTCCCAACTGCCCCAGCAGCAATTCCACCTTCACCTACGACGAACGCGGA CTGCTCACCAGCAAACGCGACAACAACGGCAACCTGACCACCTACCAGTACAGCGCCCGTGGCCTGGAGACC TCGCGCACCGAGGCCGCCGGCACTGCACAAGCGCGCACCATCACAACCGACTGGCACCCGACCCTGTTCCTC CCGGTGCAGGTCAGCGAGCCCGGCCGGATCACCCGCTACCAGTACGACGCCGAGGGACGCAAGACCGGCGAG ACCGTCACCACCCGCTGA