ViewGene

Locus Name:
GeneID:
Location:

GeneID:4177
TrivialName: PA14_47370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47370
PAO1 Ortholog Locus:PA1303
Sequence Length:540
Protein Length:179
Start: 4219948
Stop: 4220487
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04692.1|AE004559_11 (AE004559) probable signal peptidase [Pseudomonas aeruginosa PAO1]
Identities = 173/179 (96%), Positives = 175/179 (97%)
Sequence:
ATGGGCCTGCTCGCCGCGATCATGCTGGCCGTCTACCTGGCGAATCCGTTCGGCACCGCCAGTCTCGACCCG
CGCGCGCGGCTCCTCGGCGTGGCGCTGTACAAGATCCCTTCGCGCTCGATGGAACCGACCTTGCAACAGGGC
GACTTCATCCTCGCCAACGCCGCGCGCTACGCCTTCGCCGACCCGCAGGTCGGCGACCTGGTGGTGTTCCGC
TTCCCGCCGCAGCGCAGCATCGCCTATGTGAAGCGCATCGCCGGGATACCCGGCGATCGCGTGCGAATCGAT
GGCGGCCGGCTCTACGTCAATGACCACCAGGTGACCGAGCCCTACCTGGCGCAGCAGGCGCTGCGCCAGCCG
GACTCCCTGCGCATGGCCGAGCGGACCGTCCCCGCCGGCCACTACTTCATGCTCGGCGACAACCGCGACAAC
TCCAACGACAGCCGCTACTGGGGCTACGTACCGCGCGCCGACCTGGTCGGCCGGGTGTTCGTCGTCTGGTAT
GCCGAGGACACCCGGCGCATCGGTTCGGTGCGCTGA
Translation:
MGLLAAIMLAVYLANPFGTASLDPRARLLGVALYKIPSRSMEPTLQQGDFILANAARYAFADPQVGDLVVFR
FPPQRSIAYVKRIAGIPGDRVRIDGGRLYVNDHQVTEPYLAQQALRQPDSLRMAERTVPAGHYFMLGDNRDN
SNDSRYWGYVPRADLVGRVFVVWYAEDTRRIGSVR*
AnnotationID:4184GeneID:4177
AnnotatorUID: diggins
Modification Date/Time: 2005-05-26 07:07:12
Gene Name:lepB
Confidence Code:2
GeneProduct:signal peptidase
Cell Localization:(4) Inner membrane protein
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0681
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:3.4.21.89
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57675.1| (AE016871) signal peptidase I [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 284

 Score =  121 bits (304), Expect = 2e-27
 Identities = 76/180 (42%), Positives = 94/180 (52%), Gaps = 46/180 (25%)

>gb|AAN67054.1|AE016334_3 (AE016779) signal peptidase I [Pseudomonas putida KT2440]
          Length = 284

 Score =  120 bits (300), Expect = 5e-27
 Identities = 72/180 (40%), Positives = 93/180 (51%), Gaps = 46/180 (25%)
Structural Features:
COG0681, LepB, Signal peptidase I 
[Intracellular trafficking and secretion]
CD-Length = 166 residues,  85.5% aligned
Score = 73.1 bits (178), Expect = 2e-14
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 26/168 (15%)
Genomic Context:
Comment:
ReferenceID:8356
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25498
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37495
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4177_cdd.html
URL:
ReferenceID:38168
Author/Investigator(s): Klug G, Jager A, Heck C, Rauhut R.
Title: Identification, sequence analysis, and expression of the lepB gene for a leader peptidase in Rhodobacter capsulatus.
PubMed: 9079877
MedLine:
Source:
Mol Gen Genet. 1997 Feb 27;253(6):666-73.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9079877&query_hl=3
ReferenceID:38169
Author/Investigator(s): Rahman MS, Simser JA, Macaluso KR, Azad AF.
Title: Molecular and functional analysis of the lepB gene, encoding a type I signal peptidase from Rickettsia rickettsii and Rickettsia typhi.
PubMed: 12867468
MedLine:
Source:
J Bacteriol. 2003 Aug;185(15):4578-84.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=12867468
Homologs By Global Alignment
Gene ID:4177

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6449 PA1303_tr translation of PA1303 179 96.64 97.76 0 894.0
176198 gb|AAG04692.1|AE004559_11 (AE004559) probable signal peptidase [Pseudomonas aeruginosa PAO1] 179 96.64 97.76 0 894.0
176203 gb|AAM23340.1| (AE012977) Signal peptidase I [Thermoanaerobacter tengcongensis] 197 32.48 46.19 39 267.0
176202 dbj|BAA17183.1| (D90904) leader peptidase I [Synechocystis sp. PCC 6803] 240 28.75 41.25 83 289.0
6450 PA0768_tr translation of PA0768 301 27.57 35.88 139 342.0
GC ORFID: 47179How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1303Glimmer Score:
Start: 733961Stop: 733422
Length: 540
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1303 translation of PA1303Homolog Bit Score 348.0
Other Homologs: t_PA1303 (ORF: GLIMMER)
GC ORF Sequence
ATGGGCCTGCTCGCCGCGATCATGCTGGCCGTCTACCTGGCGAATCCGTTCGGCACCGCCAGTCTCGACCCG
CGCGCGCGGCTCCTCGGCGTGGCGCTGTACAAGATCCCTTCGCGCTCGATGGAACCGACCTTGCAACAGGGC
GACTTCATCCTCGCCAACGCCGCGCGCTACGCCTTCGCCGACCCGCAGGTCGGCGACCTGGTGGTGTTCCGC
TTCCCGCCGCAGCGCAGCATCGCCTATGTGAAGCGCATCGCCGGGATACCCGGCGATCGCGTGCGAATCGAT
GGCGGCCGGCTCTACGTCAATGACCACCAGGTGACCGAGCCCTACCTGGCGCAGCAGGCGCTGCGCCAGCCG
GACTCCCTGCGCATGGCCGAGCGGACCGTCCCCGCCGGCCACTACTTCATGCTCGGCGACAACCGCGACAAC
TCCAACGACAGCCGCTACTGGGGCTACGTACCGCGCGCCGACCTGGTCGGCCGGGTGTTCGTCGTCTGGTAT
GCCGAGGACACCCGGCGCATCGGTTCGGTGCGCTGA