ViewGene
Locus Name:
GeneID:
Location:

GeneID:4176
TrivialName: PA14_59000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59000
PAO1 Ortholog Locus:
Sequence Length:528
Protein Length:175
Start: 5257636
Stop: 5258163
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84233.1| (AY273869) hypothetical protein RL108 [Pseudomonas aeruginosa]
Identities = 175/175 (100%), Positives = 175/175 (100%)
Sequence:
ATGAACACTGAAGCCCGCTTTCCGAGTATCCACGCCTCGGCCGCGTTCACCGACTCGGCAGTGGTTCATGCC
AATCACGTTGGGGTCAACCCCATCGAGCTGGACGCCCTCAGCCAAGTGATCTCGCGCCTTTCGCGGGACGAG
AGCACGGTCGCACCCAGTTCGATGGAGCGAGAGCTTCGTGAGCTGGAGGAACTGGGGTACATCGAAATCTCG
ACCACCCAGGCCGGGACTCTGGTGGTCACTACGCGCGCTCCGGGGCAATTGCTTTCGGCTTACTTCTGGTCG
GTATGGATCCCGCGACACCTGTTCAGCTGCTCGCTGAAAGTGAGCCTGGTGCCGCACCTCTGCTGCGGCACT
CAGGACTCCCAGCACCTCACCGCCGTGTTCCGCATTGCAGGCAGCAAGGACGCCGCGCGCGAGTTCCTGCAT
CAGTTGGCCAACAACTATCCCGGGCATGAGCCGGAGTTGCCCGAACTGGTGGCCGTTCAGGTCGGTGATGCA
CTCAGCAAGGAGGCCGAGTCATGA
Translation:
MNTEARFPSIHASAAFTDSAVVHANHVGVNPIELDALSQVISRLSRDESTVAPSSMERELRELEELGYIEIS
TTQAGTLVVTTRAPGQLLSAYFWSVWIPRHLFSCSLKVSLVPHLCCGTQDSQHLTAVFRIAGSKDAAREFLH
QLANNYPGHEPELPELVAVQVGDALSKEAES*
AnnotationID:4183GeneID:4176
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:02
Gene Name:RL108
Confidence Code:4
GeneProduct:Conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
CP11 (Pseudomonas aeruginosa strain C, plasmid pKLC102)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8354




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25496




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4176
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
176197
                           gb|AAP84233.1|
                           (AY273869) hypothetical protein RL108 [Pseudomonas aeruginosa]
                           175
                           99.99
                           99.99
                           0
                           893.0
     

     






      

          
GC ORFID: 47178How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL108Glimmer Score: 

          
Start: 4521315Stop: 4521842

          
Length: 528


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL108 175 Homolog: No significant similarity () translation of RL108Homolog Bit Score 348.0

          
Other Homologs:  t_RL108 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACACTGAAGCCCGCTTTCCGAGTATCCACGCCTCGGCCGCGTTCACCGACTCGGCAGTGGTTCATGCC 
AATCACGTTGGGGTCAACCCCATCGAGCTGGACGCCCTCAGCCAAGTGATCTCGCGCCTTTCGCGGGACGAG 
AGCACGGTCGCACCCAGTTCGATGGAGCGAGAGCTTCGTGAGCTGGAGGAACTGGGGTACATCGAAATCTCG 
ACCACCCAGGCCGGGACTCTGGTGGTCACTACGCGCGCTCCGGGGCAATTGCTTTCGGCTTACTTCTGGTCG 
GTATGGATCCCGCGACACCTGTTCAGCTGCTCGCTGAAAGTGAGCCTGGTGCCGCACCTCTGCTGCGGCACT 
CAGGACTCCCAGCACCTCACCGCCGTGTTCCGCATTGCAGGCAGCAAGGACGCCGCGCGCGAGTTCCTGCAT 
CAGTTGGCCAACAACTATCCCGGGCATGAGCCGGAGTTGCCCGAACTGGTGGCCGTTCAGGTCGGTGATGCA 
CTCAGCAAGGAGGCCGAGTCATGA