ViewGene
Locus Name:
GeneID:
Location:

GeneID:4175
TrivialName: PA14_08000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08000
PAO1 Ortholog Locus:PA0615
Sequence Length:516
Protein Length:171
Start: 688551
Stop: 689066
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04004.1|AE004497_11 (AE004497) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 170/171 (99%), Positives = 171/171 (100%)
Sequence:
ATGCCTGAACAGGCTGTTACGCTCGAGGCTCTGTACGCGGCCATCGAGCAGGTACTGCGTGAGCGTCTGCCG
GAGGCGCAGTTGATCGGCTTCTGGCCAGGCGTGCCGGAAAATACCCCGGCGGTTTCCCTGGAAATAGCCGAG
CTACTGCCCGAGCGCGATCCCGGTACCGGCGAGAGTGCCCTGCTGTGCCGCCTGCAGGCGCGGATAATGGTG
CCGCCTGGTGCCGATCGCCAGGCGGTATCCATTGCTTGCGGAATCGTTCGGACATTGCGCGAGCAGACCTGG
AACCTGTCTCTGGAACCGGCGCGCTTCGTACGCTCGGCCGTCGACGGCAGTCGCGAGGAGCTGAAGAGCCTG
CGTGTCTGGCTGGTCGAGTGGACGCAGTCGCTGCGTCTCGGAGACCCGGAGTGGGCCTGGGAGGACCAGCCG
CCGGGCAGCCTGATGCTGGGCTTCGACCCGCAGACCGGCCCCGGCCATGAGCCGGACTACTTCGCTCCGGAG
GCGTTGGCATGA
Translation:
MPEQAVTLEALYAAIEQVLRERLPEAQLIGFWPGVPENTPAVSLEIAELLPERDPGTGESALLCRLQARIMV
PPGADRQAVSIACGIVRTLREQTWNLSLEPARFVRSAVDGSREELKSLRVWLVEWTQSLRLGDPEWAWEDQP
PGSLMLGFDPQTGPGHEPDYFAPEALA*
AnnotationID:4182GeneID:4175
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:03
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0615
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8352




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25494




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4175
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6448
                           PA0615_tr
                           translation of PA0615
                           171
                           99.41
                           99.99
                           0
                           896.0
     

     
     
176193
                           gb|AAG04004.1|AE004497_11
                           (AE004497) hypothetical protein PA0615 [Pseudomonas aeruginosa PAO1]
                           171
                           99.41
                           99.99
                           0
                           896.0
     

     
     
176194
                           dbj|BAA83152.1|
                           (AB030825) hypothetical protein [Pseudomonas aeruginosa]
                           171
                           99.41
                           99.99
                           0
                           896.0
     

     
     
176195
                           gb|AAO56882.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           178
                           42.69
                           60.67
                           10
                           374.0
     

     
     
176196
                           gb|AAN68658.1|AE016495_10
                           (AE016785) pyocin R2_PP, conserved hypothetical protein [Pseudomonas putida KT2440]
                           179
                           41.34
                           55.86
                           11
                           321.0
     

     






      

          
GC ORFID: 47177How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0615Glimmer Score: 

          
Start: 6489894Stop: 6490409

          
Length: 516


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0615 translation of PA0615Homolog Bit Score 349.0

          
Other Homologs:  t_PA0615 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGAACAGGCTGTTACGCTCGAGGCTCTGTACGCGGCCATCGAGCAGGTACTGCGTGAGCGTCTGCCG 
GAGGCGCAGTTGATCGGCTTCTGGCCAGGCGTGCCGGAAAATACCCCGGCGGTTTCCCTGGAAATAGCCGAG 
CTACTGCCCGAGCGCGATCCCGGTACCGGCGAGAGTGCCCTGCTGTGCCGCCTGCAGGCGCGGATAATGGTG 
CCGCCTGGTGCCGATCGCCAGGCGGTATCCATTGCTTGCGGAATCGTTCGGACATTGCGCGAGCAGACCTGG 
AACCTGTCTCTGGAACCGGCGCGCTTCGTACGCTCGGCCGTCGACGGCAGTCGCGAGGAGCTGAAGAGCCTG 
CGTGTCTGGCTGGTCGAGTGGACGCAGTCGCTGCGTCTCGGAGACCCGGAGTGGGCCTGGGAGGACCAGCCG 
CCGGGCAGCCTGATGCTGGGCTTCGACCCGCAGACCGGCCCCGGCCATGAGCCGGACTACTTCGCTCCGGAG 
GCGTTGGCATGA