ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4174

TrivialName: PA14_39970

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_39970

PAO1 Ortholog Locus: PA1899

Sequence Length: 489

Protein Length: 162

Start: 3561732

Stop: 3561244

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05288.1|AE004616_2 (AE004616) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1] Identities = 161/162 (99%), Positives = 161/162 (99%)

Sequence:

ATGCGAGAGTACCAACGGTTGAAAGGGTTTACCGACAACCTGGAATTGCGGCGGCGCAACCGTGCCACGGTC
GAGCACTACATGCGCATGAAGGGGGCCGAACGGTTGCAGCGGCACAGCCTGTTCGTCGAGGACGGCTGCGCC
GGCAACTGGACCACGGAAAGCGGCGAACCCCTGGTTTTCCGGGGCCATGAGAGCCTCAGGCGGCTCGCCGAG
TGGCTCGAGCGCTGCTTCCCCGACTGGGAGTGGCACAACGTGCGGATCTTCGAGACCGAGGATCCGAACCAC
CTCTGGGTCGAGTGCGACGGGCGCGGCAAGGCGCTGGTCCCGGGGTATCCGCAGGGCTATTGCGAGAACCAC
TACATCCATTCCTTCGAACTCGAGAACGGCCGGATAAAACGCAATCGCGAGTTCATGAACCCGATGCAGAAA
TTGCGTGCATTGGGAATAGCCGTTCCGCAAATAAAACGTGACGGCATTCCCACCTGA

Translation:

MREYQRLKGFTDNLELRRRNRATVEHYMRMKGAERLQRHSLFVEDGCAGNWTTESGEPLVFRGHESLRRLAE
WLERCFPDWEWHNVRIFETEDPNHLWVECDGRGKALVPGYPQGYCENHYIHSFELENGRIKRNREFMNPMQK
LRALGIAVPQIKRDGIPT*

AnnotationID:4181 GeneID:4174

AnnotatorUID: danlee

Modification Date/Time: 2003-11-13 09:09:55

Gene Name: phzA2

Confidence Code: 1

GeneProduct: probable phenazine biosynthesis protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (23) Secreted Factors (toxins, enzymes, alginate)

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Phenazine biosynthesis.

Homology:

corresponds to PA1899 of PAO1 (based on sequence and genomic context).

Structural Features:

Genomic Context:

Operon phzA2B2C2D2E2F2G2

Comment:

ReferenceID:8350

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25492

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:4174

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6444 PA1899_tr translation of PA1899 162 99.38 99.38 0 896.0

176178 gb|AAG05288.1|AE004616_2 (AE004616) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1] 162 99.38 99.38 0 896.0

176179 gb|AAD45624.1|AF092442_1 (AF092442) phenazine biosynthesis protein PhzA [Pseudomonas aeruginosa] 162 99.38 99.38 0 894.0

6445 PA4210_tr translation of PA4210 163 88.95 91.41 2 788.0

176180 gb|AAG07597.1|AE004838_1 (AE004838) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1] 163 88.95 91.41 2 788.0

GC ORFID: `47176`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1899`	Glimmer Score:
Start: `1392178`	Stop: `1392666`
Length: `489`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1899 translation of PA1899`	Homolog Bit Score `349.0`
Other Homologs: `t_PA4210 (ORF: BLASTX 309.0), t_PA4211 (ORF: BLASTX 238.0), t_PA1900 (ORF: BLASTX 237.0), t_PA1899 (ORF: GLIMMER)`
GC ORF Sequence
`ATGCGAGAGTACCAACGGTTGAAAGGGTTTACCGACAACCTGGAATTGCGGCGGCGCAACCGTGCCACGGTC GAGCACTACATGCGCATGAAGGGGGCCGAACGGTTGCAGCGGCACAGCCTGTTCGTCGAGGACGGCTGCGCC GGCAACTGGACCACGGAAAGCGGCGAACCCCTGGTTTTCCGGGGCCATGAGAGCCTCAGGCGGCTCGCCGAG TGGCTCGAGCGCTGCTTCCCCGACTGGGAGTGGCACAACGTGCGGATCTTCGAGACCGAGGATCCGAACCAC CTCTGGGTCGAGTGCGACGGGCGCGGCAAGGCGCTGGTCCCGGGGTATCCGCAGGGCTATTGCGAGAACCAC TACATCCATTCCTTCGAACTCGAGAACGGCCGGATAAAACGCAATCGCGAGTTCATGAACCCGATGCAGAAA TTGCGTGCATTGGGAATAGCCGTTCCGCAAATAAAACGTGACGGCATTCCCACCTGA`