ViewGene
Locus Name:
GeneID:
Location:

GeneID:4173
TrivialName: PA14_43370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43370
PAO1 Ortholog Locus:PA1635
Sequence Length:552
Protein Length:183
Start: 3863622
Stop: 3863071
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05024.1|AE004591_4 (AE004591) potassium-transporting ATPase, C chain [Pseudomonas aeruginosa PAO1]
Identities = 182/183 (99%), Positives = 182/183 (99%)
Sequence:
ATGTTCAAGCAACTCCGTCCGGCACTGGCGTCACTGCTGGTGCTGAGCCTGGTCACCGGCGTGGCCTATCCG
CTGCTGGTCACCGGTATCGCCCAACTGGCGTTCCCCGAGCAGGCCAATGGCAGCCTGCTGCGCGACGCCGAG
GGCAAGGTGCTCGGCTCGCGGCTGATCGCGCAGAAGTTCGACGGCGAGGAGTGGTTCCATTCGCGGCCTTCG
GCGGGCGACTACGCCACCGTTTCCAGTGCCGCGAGCAACCTGGCGCCGAGCAACCCGGCACTGGCCGAGCGC
ATCGCCAGGGACGCCGCCCAGGAGCGTATCGCCGACCAGGGGCCGGTGCCGCTGGCGCTGGTCACTACCTCC
GGTAGCGGACTCGATCCGCAGCTGCCGCCGCAGGCCGCGCGTTACCAGGCGCTGCGGGTGGCCACGGCGCGC
GGGCTGCCGCTGCGGCTGGTGGAAGACCTGGTGGAAAGCCACACCGAGCGGCCGCTGGTGGGGCCGGCGGTG
GTCAACGTGCTGGCGCTGAACATGGCGCTGACGGGGTTGAAGCGCTAG
Translation:
MFKQLRPALASLLVLSLVTGVAYPLLVTGIAQLAFPEQANGSLLRDAEGKVLGSRLIAQKFDGEEWFHSRPS
AGDYATVSSAASNLAPSNPALAERIARDAAQERIADQGPVPLALVTTSGSGLDPQLPPQAARYQALRVATAR
GLPLRLVEDLVESHTERPLVGPAVVNVLALNMALTGLKR*
AnnotationID:4180GeneID:4173
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 07:07:39
Gene Name:kdpC
Confidence Code:2
GeneProduct:potassium-transporting ATPase, C chain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2156,pfam02669
Secondary Functional Category(ies):inorganic ion transport and metabolism
EC Number:3.6.3.12
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55760.1| (AE016863) potassium-transporting ATPase, C subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 190

 Score =  229 bits (585), Expect = 5e-60
 Identities = 118/181 (65%), Positives = 143/181 (79%)

>gb|AAN69741.1|AE016610_7 (AE016789) potassium-transporting ATPase, C subunit [Pseudomonas
           putida KT2440]
          Length = 185

 Score =  228 bits (582), Expect = 1e-59
 Identities = 120/181 (66%), Positives = 139/181 (76%)

>gb|AAK23572.1| (AE005834) potassium-transporting ATPase, C subunit [Caulobacter
           crescentus CB15]
          Length = 197

 Score =  167 bits (424), Expect = 2e-41
 Identities = 95/184 (51%), Positives = 122/184 (66%), Gaps = 6/184 (3%)








 
Structural Features:
COG2156, KdpC, K+-transporting ATPase, c chain 
[Inorganic ion transport and metabolism]
CD-Length = 190 residues, 100.0% aligned
Score =  223 bits (569), Expect = 1e-59
Identities = 103/190 (54%), Positives = 122/190 (64%), Gaps = 9/190 (4%)

pfam02669, KdpC, K+-transporting ATPase, c chain. 
CD-Length = 188 residues,  99.5% aligned
Score =  161 bits (408), Expect = 5e-41
Identities = 92/188 (48%), Positives = 118/188 (62%), Gaps = 10/188 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8348




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25490




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37290




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4173_cdd.html


    		




 
URL:

















    ReferenceID:37885




  
Author/Investigator(s):
        Treuner-Lange A, Kuhn A, Durre P.





  
Title:
        The kdp system of Clostridium acetobutylicum: cloning, sequencing, and transcriptional regulation in response to potassium concentration.




  
PubMed:
        9226259


MedLine:
        




    
Source:
J Bacteriol. 1997 Jul;179(14):4501-12.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9226259

















    ReferenceID:37890




  
Author/Investigator(s):
        Sugiura A, Nakashima K, Tanaka K, Mizuno T.





  
Title:
        Clarification of the structural and functional features of the osmoregulated kdp operon of Escherichia coli.




  
PubMed:
        1630316


MedLine:
        




    
Source:
Mol Microbiol. 1992 Jul;6(13):1769-76.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1630316

















    ReferenceID:37896




  
Author/Investigator(s):
        Gassel M, Siebers A, Epstein W, Altendorf K.





  
Title:
        Assembly of the Kdp complex, the multi-subunit K+-transport ATPase of Escherichia coli.




  
PubMed:
        9858692


MedLine:
        




    
Source:
Biochim Biophys Acta. 1998 Dec 9;1415(1):77-84.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=99077600&dopt=Abstract

















    ReferenceID:37899




  
Author/Investigator(s):
        Gassel M, Altendorf K.





  
Title:
        Analysis of KdpC of the K(+)-transporting KdpFABC complex of Escherichia coli.




  
PubMed:
        11248697


MedLine:
        




    
Source:
Eur J Biochem. 2001 Mar;268(6):1772-81.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11248697









           
Homologs By Global Alignment 

           

       



     
Gene ID:4173
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6443
                           PA1635_tr
                           translation of PA1635
                           183
                           99.45
                           99.45
                           0
                           896.0
     

     
     
176135
                           gb|AAG05024.1|AE004591_4
                           (AE004591) potassium-transporting ATPase, C chain [Pseudomonas aeruginosa PAO1]
                           183
                           99.45
                           99.45
                           0
                           896.0
     

     
     
176137
                           gb|AAN69741.1|AE016610_7
                           (AE016789) potassium-transporting ATPase, C subunit [Pseudomonas putida KT2440]
                           185
                           64.86
                           75.13
                           2
                           578.0
     

     
     
176136
                           gb|AAO55760.1|
                           (AE016863) potassium-transporting ATPase, C subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           190
                           62.10
                           75.26
                           7
                           583.0
     

     
     
176142
                           dbj|BAB50089.1|
                           (AP003001) potassium-transporting atpase c chain; KdpC [Mesorhizobium loti]
                           189
                           50.26
                           66.13
                           8
                           421.0
     

     






      

          
GC ORFID: 47175How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1635Glimmer Score: 

          
Start: 1090287Stop: 1090838

          
Length: 552


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1635 translation of PA1635Homolog Bit Score 349.0

          
Other Homologs:  t_PA1635 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCAAGCAACTCCGTCCGGCACTGGCGTCACTGCTGGTGCTGAGCCTGGTCACCGGCGTGGCCTATCCG 
CTGCTGGTCACCGGTATCGCCCAACTGGCGTTCCCCGAGCAGGCCAATGGCAGCCTGCTGCGCGACGCCGAG 
GGCAAGGTGCTCGGCTCGCGGCTGATCGCGCAGAAGTTCGACGGCGAGGAGTGGTTCCATTCGCGGCCTTCG 
GCGGGCGACTACGCCACCGTTTCCAGTGCCGCGAGCAACCTGGCGCCGAGCAACCCGGCACTGGCCGAGCGC 
ATCGCCAGGGACGCCGCCCAGGAGCGTATCGCCGACCAGGGGCCGGTGCCGCTGGCGCTGGTCACTACCTCC 
GGTAGCGGACTCGATCCGCAGCTGCCGCCGCAGGCCGCGCGTTACCAGGCGCTGCGGGTGGCCACGGCGCGC 
GGGCTGCCGCTGCGGCTGGTGGAAGACCTGGTGGAAAGCCACACCGAGCGGCCGCTGGTGGGGCCGGCGGTG 
GTCAACGTGCTGGCGCTGAACATGGCGCTGACGGGGTTGAAGCGCTAG