ViewGene
Locus Name:
GeneID:
Location:

GeneID:4172
TrivialName: PA14_53200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53200
PAO1 Ortholog Locus:PA0856
Sequence Length:549
Protein Length:182
Start: 4716176
Stop: 4715628
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04245.1|AE004520_8 (AE004520) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 182/182 (100%), Positives = 182/182 (100%)
Sequence:
ATGTCGGGTCCCACGGACACATCTACCCAACCTCAAGGATTTTCCATGACCCGTCTTCGCCTCATCGGCAGC
GCCGTGCTGCTCAGCCTCAGCTCCATGGCCATGGCCGATTCCGCCAGCCAGGCCGAGCAATTCCTCAAGCTG
GTCCATGCCGACAAGCTGACGGTCCCGGTCTATGCCCAGGTGCAGCAGATGCTGGCCCAGCGCTTCGCCCAG
GCCAAGGCGCCGGAGAGCAAGAAGGCGGTTCTCGAGCGTTACCAGGCCAAGGCCAATGCCGAACTGGACCGC
GCCATCGGCTGGGACAAGATCAAGCCCGAGCTGATCAAGCTCTACACCACCAACTTCACCGAGTCCGAGCTG
AAGGACCTGAATGCCTTCTACCAGTCGCCGCTGGGCAAGAAGGTGCTGGAGAAGATGCCGCGCCTGACCGCC
GAATCCGCCCAACTGACCCAGGCCAAGCTGCAAGGCGCCGTCGAGCCGGTGAACAAGCTGATGGCCGACATG
GACAAGGAACTCGGCGTCGCCGCGCCGGCCCAGAAGAAAAAGTGA
Translation:
MSGPTDTSTQPQGFSMTRLRLIGSAVLLSLSSMAMADSASQAEQFLKLVHADKLTVPVYAQVQQMLAQRFAQ
AKAPESKKAVLERYQAKANAELDRAIGWDKIKPELIKLYTTNFTESELKDLNAFYQSPLGKKVLEKMPRLTA
ESAQLTQAKLQGAVEPVNKLMADMDKELGVAAPAQKKK*
AnnotationID:4179GeneID:4172
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 17:05:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0856
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3184
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3184, Uncharacterized protein conserved in bacteria [Function unknown]
      CD-Length = 183 residues,  96.7% aligned
      Score =  145 bits (368), Expect = 4e-36






   
Genomic Context:






   
Comment:


















    ReferenceID:8346




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25488




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4172
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6442
                           PA0856_tr
                           translation of PA0856
                           182
                           99.99
                           99.99
                           0
                           895.0
     

     
     
176129
                           gb|AAG04245.1|AE004520_8
                           (AE004520) hypothetical protein PA0856 [Pseudomonas aeruginosa PAO1]
                           182
                           99.99
                           99.99
                           0
                           895.0
     

     
     
176130
                           emb|CAB45535.1|
                           (AJ243174) hypothetical protein [Pseudomonas fluorescens]
                           188
                           63.29
                           71.27
                           21
                           549.0
     

     
     
176131
                           emb|CAB46186.1|
                           (AJ243397) hypothetical protein [Pseudomonas chlororaphis]
                           187
                           62.56
                           72.19
                           24
                           547.0
     

     
     
176132
                           emb|CAB46188.1|
                           (AJ243398) hypothetical protein [Pseudomonas putida]
                           188
                           61.70
                           71.27
                           24
                           540.0
     

     






      

          
GC ORFID: 47174How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0856Glimmer Score: 

          
Start: 237731Stop: 238279

          
Length: 549


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0856 translation of PA0856Homolog Bit Score 349.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7718 (ORF: BLASTX 209.0), t_PA0856 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGGGTCCCACGGACACATCTACCCAACCTCAAGGATTTTCCATGACCCGTCTTCGCCTCATCGGCAGC 
GCCGTGCTGCTCAGCCTCAGCTCCATGGCCATGGCCGATTCCGCCAGCCAGGCCGAGCAATTCCTCAAGCTG 
GTCCATGCCGACAAGCTGACGGTCCCGGTCTATGCCCAGGTGCAGCAGATGCTGGCCCAGCGCTTCGCCCAG 
GCCAAGGCGCCGGAGAGCAAGAAGGCGGTTCTCGAGCGTTACCAGGCCAAGGCCAATGCCGAACTGGACCGC 
GCCATCGGCTGGGACAAGATCAAGCCCGAGCTGATCAAGCTCTACACCACCAACTTCACCGAGTCCGAGCTG 
AAGGACCTGAATGCCTTCTACCAGTCGCCGCTGGGCAAGAAGGTGCTGGAGAAGATGCCGCGCCTGACCGCC 
GAATCCGCCCAACTGACCCAGGCCAAGCTGCAAGGCGCCGTCGAGCCGGTGAACAAGCTGATGGCCGACATG 
GACAAGGAACTCGGCGTCGCCGCGCCGGCCCAGAAGAAAAAGTGA