ViewGene
Locus Name:
GeneID:
Location:

GeneID:4171
TrivialName: PA14_59140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59140
PAO1 Ortholog Locus:
Sequence Length:534
Protein Length:177
Start: 5265756
Stop: 5266289
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84221.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 177/177 (100%), Positives = 177/177 (100%)
Sequence:
ATGCGGCAGCTCGATAAGGACCAGCAAGGCGCTCTGGAACAAAGTGCCTTCCGCCCACTGCAACAAACTGCC
TTCCAGGCGCTGCAACACAGTGCCTCACTAAAAGGCCTTTTAAAGCCTTTTAAAGGTAATAGGGAGCTGGCC
CAGTTGGCGGAACAGTGCGAAGCCATGGAGCAGGGATTGCTTGAACTTGCCCAGGGACTGCTGGCCCAGGTT
CGTCGCCCACCCTTCACTCTACTGCCCACCCGACTCATCGAGCAGCGCACATCCGCCCGCACAACCTTTCTC
CGCTGGCAGCACATTGCATCCCGGCGGATGGGCGTCGGGGTGTGGACGGAAATGCTGCGCCAGGACAAGACC
CCGGAATACCTGCTGCAAGACCTCTACGAGATGGAGCTGCAGCGCATCACCCTCAACATGCAGATCAGCCTG
ATCCACTCCATCGGCAAGCAGGCCGCCGAGTGCGCGGAAAAGATGGGCCAGGCCGAGGCCGAGTTCATGGGC
CGACTGCAGCAGAGCACCAACCACCACTGA
Translation:
MRQLDKDQQGALEQSAFRPLQQTAFQALQHSASLKGLLKPFKGNRELAQLAEQCEAMEQGLLELAQGLLAQV
RRPPFTLLPTRLIEQRTSARTTFLRWQHIASRRMGVGVWTEMLRQDKTPEYLLQDLYEMELQRITLNMQISL
IHSIGKQAAECAEKMGQAEAEFMGRLQQSTNHH*
AnnotationID:4178GeneID:4171
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 23:11:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8344




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25486




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4171
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
176123
                           gb|AAP84221.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           177
                           99.99
                           99.99
                           0
                           899.0
     

     
     
176124
                           gb|AAF84587.1|AE004000_4
                           (AE004000) hypothetical protein [Xylella fastidiosa 9a5c]
                           184
                           49.45
                           60.32
                           14
                           396.0
     

     
     
176127
                           emb|CAE92949.1|
                           (AJ617740) probable transcriptional regulator [Pseudomonas putida]
                           183
                           45.90
                           57.37
                           14
                           376.0
     

     
     
176128
                           emb|CAD60671.1|
                           (AJ536665) integrase regulator R [Pseudomonas sp. B13]
                           183
                           45.90
                           57.37
                           14
                           376.0
     

     
     
176126
                           gb|AAN62196.1|AF440523_103
                           (AF440523) conserved hypothetical protein [Pseudomonas aeruginosa]
                           181
                           45.85
                           58.56
                           10
                           373.0
     

     






      

          
GC ORFID: 47173How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL096Glimmer Score: 

          
Start: 4529435Stop: 4529968

          
Length: 534


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL096 177 Homolog: XF1779 / Hypothetical protein / X.fastidiosa / 9a5c (AAF84587) translation of RL096Homolog Bit Score 350.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1577 (ORF: BLASTX 200.0), t_RL096 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGCAGCTCGATAAGGACCAGCAAGGCGCTCTGGAACAAAGTGCCTTCCGCCCACTGCAACAAACTGCC 
TTCCAGGCGCTGCAACACAGTGCCTCACTAAAAGGCCTTTTAAAGCCTTTTAAAGGTAATAGGGAGCTGGCC 
CAGTTGGCGGAACAGTGCGAAGCCATGGAGCAGGGATTGCTTGAACTTGCCCAGGGACTGCTGGCCCAGGTT 
CGTCGCCCACCCTTCACTCTACTGCCCACCCGACTCATCGAGCAGCGCACATCCGCCCGCACAACCTTTCTC 
CGCTGGCAGCACATTGCATCCCGGCGGATGGGCGTCGGGGTGTGGACGGAAATGCTGCGCCAGGACAAGACC 
CCGGAATACCTGCTGCAAGACCTCTACGAGATGGAGCTGCAGCGCATCACCCTCAACATGCAGATCAGCCTG 
ATCCACTCCATCGGCAAGCAGGCCGCCGAGTGCGCGGAAAAGATGGGCCAGGCCGAGGCCGAGTTCATGGGC 
CGACTGCAGCAGAGCACCAACCACCACTGA