ViewGene
Locus Name:
GeneID:
Location:

GeneID:4170
TrivialName: PA14_06940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06940
PAO1 Ortholog Locus:PA0532
Sequence Length:507
Protein Length:168
Start: 601375
Stop: 600869
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03921.1|AE004490_1 (AE004490) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 168/168 (100%), Positives = 168/168 (100%)
Sequence:
ATGCCCGCCCGCCCTGACCGCGCACGCGTGACGATTGCACTAGCGGTGCTAGTGCATTTGCATCGCGAAACG
ATAGCGGAGGCACCCCTACCCTGGCGATACAGGAAGCAATGTCCGGGCGGGAAGCCCAGACGCCGCGCCGGC
CGGGAGGCTACGCCGCCCCTCGGTCCCGAGGTCGTCGACGCATCCACCCGACTCGCCCTGCACGAGAAGAAA
GCCCCATCCCCTTGCATGAGCGATGCGATGAGCAAGAACAAGCACCCCGATCTCGGCGAGATCCAGCGCAGC
CTGAACCAGGCGCTGGAAGGCTACGACTGCCAGTGCCGGATGCACTACGACGGCACCGTCAGCATCAATGTC
GCCGCCCGAGAGCACGACGAAACCTTCACCTTCGTCGGCATCCAGCCCGGCGAGCTGGACAACCCCACCCGC
CTGCACCTGTTCGCCGAAAGCCTGCGTCGCGACCTGGCACTACTGGAGCCCTGGTTGGGAAAGCACGCAGCC
TAG
Translation:
MPARPDRARVTIALAVLVHLHRETIAEAPLPWRYRKQCPGGKPRRRAGREATPPLGPEVVDASTRLALHEKK
APSPCMSDAMSKNKHPDLGEIQRSLNQALEGYDCQCRMHYDGTVSINVAAREHDETFTFVGIQPGELDNPTR
LHLFAESLRRDLALLEPWLGKHAA*
AnnotationID:4177GeneID:4170
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:50
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0532
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8342




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25484




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4170
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6441
                           PA0532_tr
                           translation of PA0532
                           168
                           99.99
                           99.99
                           0
                           897.0
     

     
     
176122
                           gb|AAG03921.1|AE004490_1
                           (AE004490) hypothetical protein PA0532 [Pseudomonas aeruginosa PAO1]
                           168
                           99.99
                           99.99
                           0
                           897.0
     

     






      

          
GC ORFID: 47172How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0532Glimmer Score: 

          
Start: 6402717Stop: 6402211

          
Length: 507


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0532 translation of PA0532Homolog Bit Score 350.0

          
Other Homologs:  t_PA0532 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGCCCGCCCTGACCGCGCACGCGTGACGATTGCACTAGCGGTGCTAGTGCATTTGCATCGCGAAACG 
ATAGCGGAGGCACCCCTACCCTGGCGATACAGGAAGCAATGTCCGGGCGGGAAGCCCAGACGCCGCGCCGGC 
CGGGAGGCTACGCCGCCCCTCGGTCCCGAGGTCGTCGACGCATCCACCCGACTCGCCCTGCACGAGAAGAAA 
GCCCCATCCCCTTGCATGAGCGATGCGATGAGCAAGAACAAGCACCCCGATCTCGGCGAGATCCAGCGCAGC 
CTGAACCAGGCGCTGGAAGGCTACGACTGCCAGTGCCGGATGCACTACGACGGCACCGTCAGCATCAATGTC 
GCCGCCCGAGAGCACGACGAAACCTTCACCTTCGTCGGCATCCAGCCCGGCGAGCTGGACAACCCCACCCGC 
CTGCACCTGTTCGCCGAAAGCCTGCGTCGCGACCTGGCACTACTGGAGCCCTGGTTGGGAAAGCACGCAGCC 
TAG