ViewGene
Locus Name:
GeneID:
Location:

GeneID:4169
TrivialName: PA14_10740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10740
PAO1 Ortholog Locus:PA4114
Sequence Length:510
Protein Length:169
Start: 925770
Stop: 926279
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07501.1|AE004828_2 (AE004828) spermidine acetyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 169/169 (100%), Positives = 169/169 (100%)
Sequence:
ATGATCGAACTCAGAACCATCACCCGCGACGACTGGGAAACCTGCATTGACCTGAAGGTCGCCCGCCACCAG
GCGCACTTCGTCGCTTCCAACCTCTATTCGCTGGCCCAGAGCCGCTTCCTGCCGGGGTTCCGCGCGGTCGGC
ATCCACCACGGCGGGCGCATGGTCGGCTTCGCCCTCTACGGCCCCGACGCCGACGACGGCCACTACTGGCTC
TACCGCCTGATGATCGACCGCCGCTACCAGGGCAAGGGGCATGGCCGCGCCGCCCTGCAACGGATCATCGCC
AGCGTGCGCCGGACGAGGCGGCGCAGCGATCGCCTGATGGTCGCCTACGCCGTCGACAACGACGTGGCCCGC
CAGCTTTATCGGGACGCCGGCTTCGTCGAACAGGGCCTCGCGCCCTGGGGCGAGACGATGGCCTGCCTGATG
CTGCCGGAGCCGTCCCATCGTTCCGGGAAGGTCGCCGGAGCGCCGGGCGGGCGTGCAGCGCACGGCGTCCCG
GCGTAG
Translation:
MIELRTITRDDWETCIDLKVARHQAHFVASNLYSLAQSRFLPGFRAVGIHHGGRMVGFALYGPDADDGHYWL
YRLMIDRRYQGKGHGRAALQRIIASVRRTRRRSDRLMVAYAVDNDVARQLYRDAGFVEQGLAPWGETMACLM
LPEPSHRSGKVAGAPGGRAAHGVPA*
AnnotationID:4176GeneID:4169
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:05
Gene Name:
Confidence Code:2
GeneProduct:spermidine acetyltransferase
Cell Localization:(1) Cytoplasmic
Synonyms:PA4114
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP27073.1| (AE017034) spermine/spermidine acetyltransferase, putative
           [Bacillus anthracis str. Ames]
          Length = 148

 Score =  132 bits (331), Expect = 1e-30
 Identities = 63/141 (44%), Positives = 92/141 (65%), Gaps = 1/141 (0%)

>dbj|BAB49213.1| (AP002998) spermidine acetyltransferase [Mesorhizobium loti]
          Length = 141

 Score = 90.5 bits (223), Expect = 4e-18
 Identities = 53/129 (41%), Positives = 75/129 (58%), Gaps = 1/129 (0%)








 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues,  98.8% aligned
Score = 47.6 bits (113), Expect = 9e-07
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8340




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25482




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36849




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4169_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4169
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6440
                           PA4114_tr
                           translation of PA4114
                           169
                           99.99
                           99.99
                           0
                           899.0
     

     
     
176120
                           gb|AAG07501.1|AE004828_2
                           (AE004828) spermidine acetyltransferase [Pseudomonas aeruginosa PAO1]
                           169
                           99.99
                           99.99
                           0
                           899.0
     

     
     
176121
                           gb|AAP27073.1|
                           (AE017034) spermine/spermidine acetyltransferase, putative [Bacillus anthracis str. Ames]
                           172
                           37.20
                           54.06
                           27
                           331.0
     

     






      

          
GC ORFID: 47171How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4114Glimmer Score: 

          
Start: 4028167Stop: 4027658

          
Length: 510


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4114 translation of PA4114Homolog Bit Score 350.0

          
Other Homologs:  t_PA4114 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGAACTCAGAACCATCACCCGCGACGACTGGGAAACCTGCATTGACCTGAAGGTCGCCCGCCACCAG 
GCGCACTTCGTCGCTTCCAACCTCTATTCGCTGGCCCAGAGCCGCTTCCTGCCGGGGTTCCGCGCGGTCGGC 
ATCCACCACGGCGGGCGCATGGTCGGCTTCGCCCTCTACGGCCCCGACGCCGACGACGGCCACTACTGGCTC 
TACCGCCTGATGATCGACCGCCGCTACCAGGGCAAGGGGCATGGCCGCGCCGCCCTGCAACGGATCATCGCC 
AGCGTGCGCCGGACGAGGCGGCGCAGCGATCGCCTGATGGTCGCCTACGCCGTCGACAACGACGTGGCCCGC 
CAGCTTTATCGGGACGCCGGCTTCGTCGAACAGGGCCTCGCGCCCTGGGGCGAGACGATGGCCTGCCTGATG 
CTGCCGGAGCCGTCCCATCGTTCCGGGAAGGTCGCCGGAGCGCCGGGCGGGCGTGCAGCGCACGGCGTCCCG 
GCGTAG