ViewGene
Locus Name:
GeneID:
Location:

GeneID:4168
TrivialName: PA14_11060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11060
PAO1 Ortholog Locus:PA4086
Sequence Length:570
Protein Length:189
Start: 956812
Stop: 957381
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07473.1|AE004825_2 (AE004825) probable fimbrial subunit CupB1 [Pseudomonas aeruginosa PAO1]
Identities = 179/189 (94%), Positives = 182/189 (96%)
Sequence:
ATGAACAAGTTCAAACGTGCAATTCTTGCGCCCCTCGTTGCGTCGGGCACCCTTCTCGCGCTGATGTCCCCC
GCGGCCCATGCGGTCGATGGGATCGTCAACTTCTCGGGCAACATCACCGACGTCGCGTGCGATATCAACGGC
CAGGCGCCGGGTGCGGGCAACGTCACCAACGTCGACCTGGGTATCGTGGCGCCGACCCATTTCACCGCCGTC
GGAACCAACTCCACTTTCCAGGAGTTCGATCTGGTCCTCTCCGGTGCCGGCTGCACCAATGACAAGAAGGTT
TCCATCGCCTTCGATACGGTCACCAACGTCGACCGCATCAGCGGCAACCTGATGCTGATGGGGCCGTCGAAA
GCCAAGGGCGTGCAGATCCAGATCTTCAACAATTCGGCGGCCAACACCACGAAGATCCCGCTGGGCTTGGTC
GAGGCCGCCCCGCAGAAGGCAACCATCGACAAGAACACGGCGACCCTGAAGTACAAGGCCTCCTATGTGTCC
ACCGAGAAGACCGTGATCGCGGGTACCGGCCTGTCCCATATCCGCTACCTCCTGGCGTACGAGTAA
Translation:
MNKFKRAILAPLVASGTLLALMSPAAHAVDGIVNFSGNITDVACDINGQAPGAGNVTNVDLGIVAPTHFTAV
GTNSTFQEFDLVLSGAGCTNDKKVSIAFDTVTNVDRISGNLMLMGPSKAKGVQIQIFNNSAANTTKIPLGLV
EAAPQKATIDKNTATLKYKASYVSTEKTVIAGTGLSHIRYLLAYE*
AnnotationID:4175GeneID:4168
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 08:08:21
Gene Name:cupB1
Confidence Code:2
GeneProduct:putative fimbrial subunit CupB1
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3539,pfam00419
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3539, FimA, P pilus assembly protein, pilin FimA 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 184 residues, 100.0% aligned
Score = 68.7 bits (167), Expect = 5e-13
Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 12/191 (6%)

pfam00419, Fimbrial, Fimbrial protein.
CD-Length = 151 residues, 100.0% aligned
Score = 61.5 bits (149), Expect = 6e-11
Identities = 46/160 (28%), Positives = 66/160 (41%), Gaps = 10/160 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8338




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25480




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36833




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4168_cdd.html


    		




 
URL:

















    ReferenceID:36942




  
Author/Investigator(s):
        Vallet I, Olson JW, Lory S, Lazdunski A, Filloux A.





  
Title:
        The chaperone/usher pathways of Pseudomonas aeruginosa: identification of fimbrial gene clusters (cup) and their involvement in biofilm formation.




  
PubMed:
        11381121


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 2001 Jun 5;98(12):6911-6. Epub 2001 May 29.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=11381121

















    ReferenceID:36943




  
Author/Investigator(s):
        Klemm P, Jorgensen BJ, van Die I, de Ree H, Bergmans H.





  
Title:
        The fim genes responsible for synthesis of type 1 fimbriae in Escherichia coli, cloning and genetic organization.




  
PubMed:
        2863734


MedLine:
        




    
Source:
Mol Gen Genet. 1985;199(3):410-4.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2863734









           
Homologs By Global Alignment 

           

       



     
Gene ID:4168
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6439
                           PA4086_tr
                           translation of PA4086
                           189
                           94.70
                           96.29
                           0
                           899.0
     

     
     
176119
                           gb|AAG07473.1|AE004825_2
                           (AE004825) probable fimbrial subunit CupB1 [Pseudomonas aeruginosa PAO1]
                           189
                           94.70
                           96.29
                           0
                           899.0
     

     






      

          
GC ORFID: 47170How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4086Glimmer Score: 

          
Start: 3997125Stop: 3996556

          
Length: 570


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4086 translation of PA4086Homolog Bit Score 350.0

          
Other Homologs:  t_PA4086 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAAGTTCAAACGTGCAATTCTTGCGCCCCTCGTTGCGTCGGGCACCCTTCTCGCGCTGATGTCCCCC 
GCGGCCCATGCGGTCGATGGGATCGTCAACTTCTCGGGCAACATCACCGACGTCGCGTGCGATATCAACGGC 
CAGGCGCCGGGTGCGGGCAACGTCACCAACGTCGACCTGGGTATCGTGGCGCCGACCCATTTCACCGCCGTC 
GGAACCAACTCCACTTTCCAGGAGTTCGATCTGGTCCTCTCCGGTGCCGGCTGCACCAATGACAAGAAGGTT 
TCCATCGCCTTCGATACGGTCACCAACGTCGACCGCATCAGCGGCAACCTGATGCTGATGGGGCCGTCGAAA 
GCCAAGGGCGTGCAGATCCAGATCTTCAACAATTCGGCGGCCAACACCACGAAGATCCCGCTGGGCTTGGTC 
GAGGCCGCCCCGCAGAAGGCAACCATCGACAAGAACACGGCGACCCTGAAGTACAAGGCCTCCTATGTGTCC 
ACCGAGAAGACCGTGATCGCGGGTACCGGCCTGTCCCATATCCGCTACCTCCTGGCGTACGAGTAA