ViewGene
Locus Name:
GeneID:
Location:

GeneID:4166
TrivialName: PA14_34850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34850
PAO1 Ortholog Locus:PA2301
Sequence Length:543
Protein Length:180
Start: 3103232
Stop: 3103774
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05689.1|AE004656_1 (AE004656) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 180/180 (100%), Positives = 180/180 (100%)
Sequence:
ATGGTTCTGCGCGAATACACCCAACGCCACCGGCTCGACGCCGTCGCCCCGGCCGACTACCACCGCCACCTG
CCGGAGCAGGTCGCGCGCGGCCTGCCTTCCGCCGAGCTGGTGGTGTTCCGCGTCGCCGACGAGCATTCCGAC
ACCGCGGCGTTCAGCGCACGCTACGGCTTTGGCCTGGAGGACTGCGCCAATACCCTGGTCCTGCGTTACAAG
CGCGACGGCGCCGAAGGCTATGCCGCGGTGGTCAACCTGGGCTCGCGGCGGCTCGACGTGAACGGCGCGGTC
AAGGCGCTGCTCGGGGCCCGCCGGCTGTCCTTCGCCGCCCGCGAGGTCGCCACCGAGCTGACCGGCATGCAG
TTCGGCGGCATCACCGCGTTCGGCTTGCCCGAAGGCATGCCGCTGCTGGTCGACGCGGCGGTCTTCGAACGG
CCGTTGGTGGTGATGGGCGCCGGGGTCCGCGAGACCAAGCTGCTGCTGTCCCCGGCACTGCTGAAAGACCTT
CCCGGAGTGGTGGTCGCCGAACTCAGCGAAGCCGGTTGA
Translation:
MVLREYTQRHRLDAVAPADYHRHLPEQVARGLPSAELVVFRVADEHSDTAAFSARYGFGLEDCANTLVLRYK
RDGAEGYAAVVNLGSRRLDVNGAVKALLGARRLSFAAREVATELTGMQFGGITAFGLPEGMPLLVDAAVFER
PLVVMGAGVRETKLLLSPALLKDLPGVVVAELSEAG*
AnnotationID:4173GeneID:4166
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 12:12:52
Gene Name:
Confidence Code:3
GeneProduct:putative tRNA synthase
Cell Localization:()
Synonyms:PA2301
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04073,cd00002
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
pfam04073, YbaK, YbaK / prolyl-tRNA synthetases associated domain. 
CD-Length = 143 residues,  95.8% aligned
Score = 96.9 bits (241), Expect = 1e-21
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 4/141 (2%)

cd00002, YbaK, protein family related to YbaK Protein From H. Influenzae (HI1434)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8334




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25476




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32489




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4166_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4166
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6437
                           PA2301_tr
                           translation of PA2301
                           180
                           99.99
                           99.99
                           0
                           899.0
     

     
     
176112
                           gb|AAG05689.1|AE004656_1
                           (AE004656) hypothetical protein PA2301 [Pseudomonas aeruginosa PAO1]
                           180
                           99.99
                           99.99
                           0
                           899.0
     

     
     
176113
                           emb|CAE32052.1|
                           (BX640441) Conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           183
                           64.48
                           72.67
                           6
                           557.0
     

     
     
176114
                           emb|CAE37458.1|
                           (BX640429) Conserved hypothetical protein [Bordetella parapertussis]
                           183
                           63.93
                           71.58
                           6
                           551.0
     

     
     
176115
                           emb|CAC42858.1|
                           (AL939108) conserved hypothetical protein [Streptomyces coelicolor A3(2)]
                           190
                           40.00
                           53.68
                           15
                           280.0
     

     






      

          
GC ORFID: 47168How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2301Glimmer Score: 

          
Start: 1850684Stop: 1850142

          
Length: 543


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2301 translation of PA2301Homolog Bit Score 350.0

          
Other Homologs:  t_PA2301 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTTCTGCGCGAATACACCCAACGCCACCGGCTCGACGCCGTCGCCCCGGCCGACTACCACCGCCACCTG 
CCGGAGCAGGTCGCGCGCGGCCTGCCTTCCGCCGAGCTGGTGGTGTTCCGCGTCGCCGACGAGCATTCCGAC 
ACCGCGGCGTTCAGCGCACGCTACGGCTTTGGCCTGGAGGACTGCGCCAATACCCTGGTCCTGCGTTACAAG 
CGCGACGGCGCCGAAGGCTATGCCGCGGTGGTCAACCTGGGCTCGCGGCGGCTCGACGTGAACGGCGCGGTC 
AAGGCGCTGCTCGGGGCCCGCCGGCTGTCCTTCGCCGCCCGCGAGGTCGCCACCGAGCTGACCGGCATGCAG 
TTCGGCGGCATCACCGCGTTCGGCTTGCCCGAAGGCATGCCGCTGCTGGTCGACGCGGCGGTCTTCGAACGG 
CCGTTGGTGGTGATGGGCGCCGGGGTCCGCGAGACCAAGCTGCTGCTGTCCCCGGCACTGCTGAAAGACCTT 
CCCGGAGTGGTGGTCGCCGAACTCAGCGAAGCCGGTTGA