ViewGene
Locus Name:
GeneID:
Location:

GeneID:4164
TrivialName: PA14_52140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52140
PAO1 Ortholog Locus:PA0937
Sequence Length:540
Protein Length:179
Start: 4624112
Stop: 4623573
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04326.1|AE004528_4 (AE004528) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 179/179 (100%), Positives = 179/179 (100%)
Sequence:
ATGAGCATGTCATTGCGTGACCAGTTGCTGAAAGCCGGGCTGGTCAATGAGAAACAGGCCAAGCAGGCCACC
AAGCAGAAACAGAAACAGCAGCGCCTGGAGCACAAGAACCAGGTCGACAAGGACGACTCCCAGCGCCAGGCG
GCGGAGCAGGCCAAGGCGGAAAAGCTGGCGCGCGACCAGGAATTGAACCGCCAGCAGCAGGAAAAAGCCGAG
AAGAAGGCCAAGGCCGCGCAGATCAAGCAACTTATCGAGGGGACGCGCCTGCCCAAGCTGGAAAGCGACGAC
TACTACAATTTCGTCGACGCCAAGAAGGTCAAGCGGATCGCGGTCAACGACCTGATCCGCGACAAGCTGAGC
CGAGGCAGCCTGGCTATCGTCAGCTATGACGGACGCTACGAGATCGTGCCCCGGGATGCGGCGGTGAAGATC
CAGGAGCGCGATCCGCGGCGGGTGGTGCTGCTCAACGTACAGAGCCAGGAGCCGGACGAAGACGATCCCTAC
AAGGACTATGTGGTGCCCGACGATCTCATGTGGTGA
Translation:
MSMSLRDQLLKAGLVNEKQAKQATKQKQKQQRLEHKNQVDKDDSQRQAAEQAKAEKLARDQELNRQQQEKAE
KKAKAAQIKQLIEGTRLPKLESDDYYNFVDAKKVKRIAVNDLIRDKLSRGSLAIVSYDGRYEIVPRDAAVKI
QERDPRRVVLLNVQSQEPDEDDPYKDYVVPDDLMW*
AnnotationID:4171GeneID:4164
AnnotatorUID: danlee
Modification Date/Time: 2004-05-10 15:03:36
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0937, yaiL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8330




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25472




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4164
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6435
                           PA0937_tr
                           translation of PA0937
                           179
                           99.99
                           99.99
                           0
                           897.0
     

     
     
176105
                           gb|AAG04326.1|AE004528_4
                           (AE004528) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           179
                           99.99
                           99.99
                           0
                           897.0
     

     
     
176106
                           gb|AAO55216.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           179
                           72.06
                           86.03
                           0
                           668.0
     

     
     
176107
                           gb|AAN67279.1|AE016354_6
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           179
                           68.71
                           84.91
                           0
                           649.0
     

     
     
176110
                           gb|AAN78940.1|AE016756_123
                           (AE016756) Hypothetical protein yaiL [Escherichia coli CFT073]
                           193
                           38.34
                           56.47
                           22
                           316.0
     

     






      

          
GC ORFID: 47166How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0937Glimmer Score: 

          
Start: 329795Stop: 330334

          
Length: 540


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0937 translation of PA0937Homolog Bit Score 350.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6456 (ORF: BLASTX 258.0), t_PA0937 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATGTCATTGCGTGACCAGTTGCTGAAAGCCGGGCTGGTCAATGAGAAACAGGCCAAGCAGGCCACC 
AAGCAGAAACAGAAACAGCAGCGCCTGGAGCACAAGAACCAGGTCGACAAGGACGACTCCCAGCGCCAGGCG 
GCGGAGCAGGCCAAGGCGGAAAAGCTGGCGCGCGACCAGGAATTGAACCGCCAGCAGCAGGAAAAAGCCGAG 
AAGAAGGCCAAGGCCGCGCAGATCAAGCAACTTATCGAGGGGACGCGCCTGCCCAAGCTGGAAAGCGACGAC 
TACTACAATTTCGTCGACGCCAAGAAGGTCAAGCGGATCGCGGTCAACGACCTGATCCGCGACAAGCTGAGC 
CGAGGCAGCCTGGCTATCGTCAGCTATGACGGACGCTACGAGATCGTGCCCCGGGATGCGGCGGTGAAGATC 
CAGGAGCGCGATCCGCGGCGGGTGGTGCTGCTCAACGTACAGAGCCAGGAGCCGGACGAAGACGATCCCTAC 
AAGGACTATGTGGTGCCCGACGATCTCATGTGGTGA