ViewGene
Locus Name:
GeneID:
Location:

GeneID:4163
TrivialName: PA14_59710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59710
PAO1 Ortholog Locus:
Sequence Length:549
Protein Length:182
Start: 5313527
Stop: 5314075
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84171.1| (AY273869) putative fimbrial protein precursor [Pseudomonas aeruginosa]
Identities = 180/182 (98%), Positives = 181/182 (99%)
Sequence:
ATGAAACCTCAAAGATCTGCCCTGACTATCGCCGCATTTCTCGCATTGCCGGGTATCGCGGCGGCTGCCAAT
ACCATCACCTTCCACGGAGAAGTGACCGACCAGACCTGTTCCGCCGTCGTCGACGGACGAACCGACCCGACC
GTGATACTCGACACCGTACCGGTAAGCGCTCTTGACGGCGCAGTCGGCAAACCCGCCGGGGAAACCAGCTTC
ACCCTGCAACTGACCGGTTGCGCCGCTCCGGCGGCCGATGCCGAGGAGCACTTCAGCGTGATGTTCCAGGCG
GTCAATCCGACCAGCGCCGGCAATCTGACCAATACCGCGTCCGCCGGCGCCACCGGCGTAGCGCTGCAGCTA
CTGACGGCACCGGGCGGCAGCGAGGTCAATCTGGCCGGCGGGTCGGCCGTGGCTGCCGGTGACATCGTGCTC
GCAGGAGGCGAGACCAGCACCAGCTACGACTATGCCGTCCGCTACATCTCCGAAGCGACCACCGTCACTCCG
GGACCGGTGCTCGGCTCGGTGACCTACACCCTGCGTTACGAGTAA
Translation:
MKPQRSALTIAAFLALPGIAAAANTITFHGEVTDQTCSAVVDGRTDPTVILDTVPVSALDGAVGKPAGETSF
TLQLTGCAAPAADAEEHFSVMFQAVNPTSAGNLTNTASAGATGVALQLLTAPGGSEVNLAGGSAVAAGDIVL
AGGETSTSYDYAVRYISEATTVTPGPVLGSVTYTLRYE*
AnnotationID:4170GeneID:4163
AnnotatorUID: diggins
Modification Date/Time: 2006-02-02 23:11:30
Gene Name:cupD1
Confidence Code:3
GeneProduct:putative fimbrial protein precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM85946.1|AE013842_1 (AE013842) putative fimbrial precursor [Yersinia pestis KIM]
          Length = 189

 Score =  112 bits (280), Expect = 1e-24
 Identities = 75/182 (41%), Positives = 105/182 (57%), Gaps = 12/182 (6%)

>dbj|BAB34703.1| (AP002554) putative major pilin protein [Escherichia coli O157:H7]
          Length = 186

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 64/179 (35%), Positives = 99/179 (55%), Gaps = 10/179 (5%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8328




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25470




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38315




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4163_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4163
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
176098
                           gb|AAP84171.1|
                           (AY273869) putative fimbrial protein precursor [Pseudomonas aeruginosa]
                           182
                           98.90
                           99.45
                           0
                           900.0
     

     
     
6434
                           PA2128_tr
                           translation of PA2128
                           186
                           69.89
                           79.03
                           7
                           637.0
     

     
     
176099
                           gb|AAG05516.1|AE004640_5
                           (AE004640) fimbrial subunit CupA1 [Pseudomonas aeruginosa PAO1]
                           186
                           69.89
                           79.03
                           7
                           637.0
     

     
     
176103
                           gb|AAM83942.1|AE013635_7
                           (AE013635) fimbrial protein (precursor) [Yersinia pestis KIM]
                           188
                           42.02
                           56.91
                           18
                           284.0
     

     
     
176104
                           emb|CAC93344.1|
                           (AJ414159) putative fimbrial protein [Yersinia pestis CO92]
                           188
                           42.02
                           56.91
                           18
                           284.0
     

     






      

          
GC ORFID: 47165How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL044Glimmer Score: 

          
Start: 4577206Stop: 4577754

          
Length: 549


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_RL044 CupA1 182 Homolog: PA2128 / Probable fimbrial protein (precursor); Biofilm-related / P.aeruginosa / PA01 (AAG05516) translation of RL044Homolog Bit Score 351.0

          
Other Homologs:  t_PA2128 (ORF: BLASTX 249.0), t_RL044 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACCTCAAAGATCTGCCCTGACTATCGCCGCATTTCTCGCATTGCCGGGTATCGCGGCGGCTGCCAAT 
ACCATCACCTTCCACGGAGAAGTGACCGACCAGACCTGTTCCGCCGTCGTCGACGGACGAACCGACCCGACC 
GTGATACTCGACACCGTACCGGTAAGCGCTCTTGACGGCGCAGTCGGCAAACCCGCCGGGGAAACCAGCTTC 
ACCCTGCAACTGACCGGTTGCGCCGCTCCGGCGGCCGATGCCGAGGAGCACTTCAGCGTGATGTTCCAGGCG 
GTCAATCCGACCAGCGCCGGCAATCTGACCAATACCGCGTCCGCCGGCGCCACCGGCGTAGCGCTGCAGCTA 
CTGACGGCACCGGGCGGCAGCGAGGTCAATCTGGCCGGCGGGTCGGCCGTGGCTGCCGGTGACATCGTGCTC 
GCAGGAGGCGAGACCAGCACCAGCTACGACTATGCCGTCCGCTACATCTCCGAAGCGACCACCGTCACTCCG 
GGACCGGTGCTCGGCTCGGTGACCTACACCCTGCGTTACGAGTAA