ViewGene
Locus Name:
GeneID:
Location:

GeneID:4162
TrivialName: PA14_02140
AnnotatorUID: danlee
Modification Date/Time:2006-06-02 23:11:17
LocusName:PA14_02140
PAO1 Ortholog Locus:PA0171
Sequence Length:543
Protein Length:180
Start: 193608
Stop: 193066
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03561.1|AE004455_2 (AE004455) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 180/180 (100%), Positives = 180/180 (100%)
Sequence:
ATGGAAACGCTAGACCTGCTGGCCATGCGTGAAAGCTACACCCGCCAACGCATCCTGCTCTGCTTCAACGGA
CCGATCTCGCGCAGCCTGATCGAGGAGATAGGCCACGCGCTGCGCAACTACCTGCACGCCGAACAGGCCAAG
CCGAGCGAAGCGATGGACGTCTTCGCGGTGTACATCGAGATGACCCAGAACATCCGCCACTACGCCAATCTC
AAGGGCTACGGCGAACACGAGGCGGCGGCCACGGTAGCCATCGCCCGCAACGAGGACGGCCACTACGTGGTG
TCCGCCGGCAACCTGGTGGAGCGCGACGACGGCCAGAGCCTGGTGCGCAGCATCCAGGCCATCGCCAACCTC
GACAAGGCCGCCCTCAAGGCCGCCTACAAGGAGCAGCTACGCCGCCCGCGCGACAGCGGCTGCGCCAGCGGA
GCCGGTCTCGGCCTGCTGGACATCGCCCGCAAGTCCAGCGAACCACTGGCCGCATCGCTGAAGGAACAGCCC
GACGGGCGCGCCTTCTTCAGCCTGCGCGCCGTGATCTGA
Translation:
METLDLLAMRESYTRQRILLCFNGPISRSLIEEIGHALRNYLHAEQAKPSEAMDVFAVYIEMTQNIRHYANL
KGYGEHEAAATVAIARNEDGHYVVSAGNLVERDDGQSLVRSIQAIANLDKAALKAAYKEQLRRPRDSGCASG
AGLGLLDIARKSSEPLAASLKEQPDGRAFFSLRAVI*
AnnotationID:4169GeneID:4162
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 07:07:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0171
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8326




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25468




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4162
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6433
                           PA0171_tr
                           translation of PA0171
                           180
                           99.99
                           99.99
                           0
                           901.0
     

     
     
176096
                           gb|AAG03561.1|AE004455_2
                           (AE004455) hypothetical protein PA0171 [Pseudomonas aeruginosa PAO1]
                           180
                           99.99
                           99.99
                           0
                           901.0
     

     
     
176097
                           gb|AAR34926.1|
                           (AE017212) conserved hypothetical protein [Geobacter sulfurreducens PCA]
                           182
                           43.95
                           60.43
                           8
                           326.0
     

     






      

          
GC ORFID: 47164How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0171Glimmer Score: 

          
Start: 5994947Stop: 5994405

          
Length: 543


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0171 translation of PA0171Homolog Bit Score 351.0

          
Other Homologs:  t_PA0171 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAACGCTAGACCTGCTGGCCATGCGTGAAAGCTACACCCGCCAACGCATCCTGCTCTGCTTCAACGGA 
CCGATCTCGCGCAGCCTGATCGAGGAGATAGGCCACGCGCTGCGCAACTACCTGCACGCCGAACAGGCCAAG 
CCGAGCGAAGCGATGGACGTCTTCGCGGTGTACATCGAGATGACCCAGAACATCCGCCACTACGCCAATCTC 
AAGGGCTACGGCGAACACGAGGCGGCGGCCACGGTAGCCATCGCCCGCAACGAGGACGGCCACTACGTGGTG 
TCCGCCGGCAACCTGGTGGAGCGCGACGACGGCCAGAGCCTGGTGCGCAGCATCCAGGCCATCGCCAACCTC 
GACAAGGCCGCCCTCAAGGCCGCCTACAAGGAGCAGCTACGCCGCCCGCGCGACAGCGGCTGCGCCAGCGGA 
GCCGGTCTCGGCCTGCTGGACATCGCCCGCAAGTCCAGCGAACCACTGGCCGCATCGCTGAAGGAACAGCCC 
GACGGGCGCGCCTTCTTCAGCCTGCGCGCCGTGATCTGA