ViewGene

Locus Name:
GeneID:
Location:

GeneID:4161
TrivialName: PA14_68480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68480
PAO1 Ortholog Locus:PA5184
Sequence Length:558
Protein Length:185
Start: 6109123
Stop: 6109680
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08569.1|AE004931_6 (AE004931) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 183/185 (98%), Positives = 183/185 (98%)
Sequence:
ATGCGCCCGTCGTTCGCCAGTTGGGGCCTGCTTGCCCTCCTGCTCCTGCAAGGCCCGCTGCTCCAGGCCCAG
CCGCTGTCGCCGGCTCTCCAGCAACTGTTGAGCCTGAGCAGCCAGCGTTTGCAACTAGCCGATCAGGTAGCC
CAGAGCAAGGCCCAGTCGGGCAAGGCGGTACAGGACAGCCCGCGGGAAGAACAACAGTTGCAGATGCTCGCC
GGACAAGCCGGGAGCCACGGGGTCGGCGCCGAGCAGGTGCGCCTGCTGTTCGCCGCGCAGATCGAGGCGAAC
AAGCTGGTCCAGTACCGCCTGCTCAGCCGGCCGCTACCGGACGCTGGCCAGGCGGTCGACCTGGAGCGCATC
CGCAGCCGCCTCAATCAGCTCAACCTGGAGCTGCTGCGCGGCTACGCCCCGGCGCTCGCCGAACTGCGCGTC
GACGACTGCCGGCCGAGGCTCAACCAGGCGCTGCAACGGCAGGTACGCGACGATCGCCTGGACGAGCTGCAC
GCCATCGCCCTGTCACGGGCGGCGGGCGATCTCTGTCACTGGGCCGCGCTCTGA
Translation:
MRPSFASWGLLALLLLQGPLLQAQPLSPALQQLLSLSSQRLQLADQVAQSKAQSGKAVQDSPREEQQLQMLA
GQAGSHGVGAEQVRLLFAAQIEANKLVQYRLLSRPLPDAGQAVDLERIRSRLNQLNLELLRGYAPALAELRV
DDCRPRLNQALQRQVRDDRLDELHAIALSRAAGDLCHWAAL*
AnnotationID:4168GeneID:4161
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 16:04:28
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic monofunctional chorismate mutase
Cell Localization:()
Synonyms:PA5184
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01817
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam01817, Chorismate_mut, Chorismate mutase.
Genomic Context:
Comment:
ReferenceID:8324
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25466
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34902
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4161_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4161

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6432 PA5184_tr translation of PA5184 185 98.91 98.91 0 900.0
176094 gb|AAG08569.1|AE004931_6 (AE004931) hypothetical protein PA5184 [Pseudomonas aeruginosa PAO1] 185 98.91 98.91 0 900.0
176095 gb|AAK73353.1|AF389865_1 (AF389865) periplasmic monofunctional chorismate mutase [Pseudomonas aeruginosa] 185 98.91 98.91 0 900.0
GC ORFID: 47163How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5184Glimmer Score:
Start: 5372809Stop: 5373366
Length: 558
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5184 translation of PA5184Homolog Bit Score 351.0
Other Homologs: t_PA5184 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCCGTCGTTCGCCAGTTGGGGCCTGCTTGCCCTCCTGCTCCTGCAAGGCCCGCTGCTCCAGGCCCAG
CCGCTGTCGCCGGCTCTCCAGCAACTGTTGAGCCTGAGCAGCCAGCGTTTGCAACTAGCCGATCAGGTAGCC
CAGAGCAAGGCCCAGTCGGGCAAGGCGGTACAGGACAGCCCGCGGGAAGAACAACAGTTGCAGATGCTCGCC
GGACAAGCCGGGAGCCACGGGGTCGGCGCCGAGCAGGTGCGCCTGCTGTTCGCCGCGCAGATCGAGGCGAAC
AAGCTGGTCCAGTACCGCCTGCTCAGCCGGCCGCTACCGGACGCTGGCCAGGCGGTCGACCTGGAGCGCATC
CGCAGCCGCCTCAATCAGCTCAACCTGGAGCTGCTGCGCGGCTACGCCCCGGCGCTCGCCGAACTGCGCGTC
GACGACTGCCGGCCGAGGCTCAACCAGGCGCTGCAACGGCAGGTACGCGACGATCGCCTGGACGAGCTGCAC
GCCATCGCCCTGTCACGGGCGGCGGGCGATCTCTGTCACTGGGCCGCGCTCTGA