ViewGene
Locus Name:
GeneID:
Location:

GeneID:416
TrivialName: PA14_38770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38770
PAO1 Ortholog Locus:PA1990
Sequence Length:1827
Protein Length:608
Start: 3459128
Stop: 3457302
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05378.1|AE004625_8 (AE004625) probable peptidase [Pseudomonas aeruginosa PAO1]
Identities = 604/608 (99%), Positives = 606/608 (99%)
Sequence:
ATGGTCGACTACGGCGACTGGCCGAGCGACTGGAGCGCCGAGCGCGCGGTGGCCGCCGGGCGCGATTTCAGC
GAGCTGAAGGCGGCCCATGGCGGGCTGGCCTGGGTGGAATTCGATCCGGCCAGCGCGCGCTCGCGCCTGTAC
CTGTGGCGCGACGGCGTGCTGGAGGAGCCCACCGCGCCGGACGGCTCGGTGCGCAGCCGGGTCTACGAGTAC
GGCGGCGGCGCCTGCTGCGTGACGCTCGACGGGCTGGCCTGGGTCGACGAAACCGACCAGCAGGTACGCCGC
TGGCGAGCGGGCCGCGCAGCCCAAGTGCTGGGCGGCGGGGCGCAGTGTCGCTACGGCGACCTGGCCTACGTC
GATGCCTGGGATGCCCTGCTGGCGGTGGAAGAGAGCCATGGGCCGACCGGGGTCGTGCATCGCATCGTGCGC
CTGGACGCCGATGGCGCGCGCCGGGTGCTGGTCGAGGGTGCCGATTTCTACGCCGCGCCGCGTGCCGCCGGC
CAGGGGCGGCGGCTGGCCTGGATCGAATGGGACCGTCCGCACCAGCCCTGGACCGAGACCCGCCTGGGCCTG
GCGGAGAATGGGCGTACGCGCTGCCTGGCCGGAGCCGGAGGCGGCGAGTCGATCCAGCAACCACGCTTCGAT
CCCGCCGGCCGCCTTCACTGGCTGAGCGACCGCGACGGCTGGTGGCGTCCCTGCGCCGAGGTAGCGTTGGCC
GGCCGCTTCGCCGATGCCGACCACGCTGGCGCGCCCTGGCAATTGGGCGCTTGCAGCTACCTGCCGCTGGGA
GAGGGAAGGCTGCTGCTCAGTCGCGTCGAGGCCGGCGGCGGGCAACTGTTCCTGCGCGAAGCGGACGGCAGC
GAGCGGCGCCTGGCCGCGGACTGGAACCGGTTCGCCGGACTGGCCGCGGATGCCCGGGCGTTCTACTGCATC
GCGGCGGCGGCCGGACGCCTGCCGGCGCTGCTGGCGATCCACCGCGACGACCTGCGCGTCGAGGTGCTGCGT
GGCGGCGAGCGACCGCTGGCGGAGGATGACCTGTCGCATCCGCAGGCCTTCGTCTATGGGCTGGGCAACGGC
GAAAACGGCCACGGTTTCTTCTATCCGCCGCGCAATGCCCGCCGCCGCGTCGATCCCCGACGACCAGCGCCG
CTGCTGGTGTGGCTGCATGGCGGACCGACCTCGATGCATTCGCCGGCGTTCGATGCCGGCCTGCAATTCTGG
ACCCAGCGCGGTTTCGCCGTGGCGGCGCTGAACTACCGGGGCAGCAGCGGCTACGGCCGCGCCTATCGGCAG
CGCTTGCGCGGCCAGTGGGGGCGCCTGGAGTTGCGCGATATCGAGGCCGCGCTGGCGCAGCTGGACGCGGAG
GGATGGATCGACCGCGCCCGGGTCTTCGTCCGTGGCGCCAGCGCCGGAGGCTACAGCGCGCTGCGCGCCCTG
GCTTGCCTCGATGGCCTGCGCGGCGGCGCCAGTCTCTATGGGGTCAGCGATCCGTTGGCGCTGGCGCGTTGC
ACCCACAAGTTCGAAGGCGACTACCTCGACTGGCTGATCGGCGACCCGCAGCGCCAGCGCCGTCGCTACCTG
GTGCGCAGCCCGGTGCTTCAGGTCGGGCGTATCCGCGCGCCGGTAGTGTTCTTCCAGGGCGGGCTCGACGCG
GTGGTGGTGCCGGAGCAGACCGAGGCGATGGTCGCCGGCCTGCGGCGCAGCGGCGTGCGCGTGGAGTGCCAC
CGCTATCCGCAGGAGCGCCACGGTTTCCGCCAGCCGGCCAATCGTGCCCATGCGCTGCTGGCGGAATGGCGC
TTCTACCTGGTCCTGCTGGAGGATTGA
Translation:
MVDYGDWPSDWSAERAVAAGRDFSELKAAHGGLAWVEFDPASARSRLYLWRDGVLEEPTAPDGSVRSRVYEY
GGGACCVTLDGLAWVDETDQQVRRWRAGRAAQVLGGGAQCRYGDLAYVDAWDALLAVEESHGPTGVVHRIVR
LDADGARRVLVEGADFYAAPRAAGQGRRLAWIEWDRPHQPWTETRLGLAENGRTRCLAGAGGGESIQQPRFD
PAGRLHWLSDRDGWWRPCAEVALAGRFADADHAGAPWQLGACSYLPLGEGRLLLSRVEAGGGQLFLREADGS
ERRLAADWNRFAGLAADARAFYCIAAAAGRLPALLAIHRDDLRVEVLRGGERPLAEDDLSHPQAFVYGLGNG
ENGHGFFYPPRNARRRVDPRRPAPLLVWLHGGPTSMHSPAFDAGLQFWTQRGFAVAALNYRGSSGYGRAYRQ
RLRGQWGRLELRDIEAALAQLDAEGWIDRARVFVRGASAGGYSALRALACLDGLRGGASLYGVSDPLALARC
THKFEGDYLDWLIGDPQRQRRRYLVRSPVLQVGRIRAPVVFFQGGLDAVVVPEQTEAMVAGLRRSGVRVECH
RYPQERHGFRQPANRAHALLAEWRFYLVLLED*
AnnotationID:425GeneID:416
AnnotatorUID: diggins
Modification Date/Time: 2004-06-24 12:12:48
Gene Name:
Confidence Code:3
GeneProduct:putative dipeptidyl aminopeptidase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1506
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66006.1|AE016229_7 (AE016775) prolyl oligopeptidase family protein [Pseudomonas putida
           KT2440]
          Length = 612

 Score =  567 bits (1461), Expect = e-161
 Identities = 321/607 (52%), Positives = 386/607 (63%), Gaps = 29/607 (4%)








 
Structural Features:
COG1506, DAP2, 
Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 
[Amino acid transport and metabolism]






   
Genomic Context:






   
Comment:


















    ReferenceID:835




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17977




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32738




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:416_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:416
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
705
                           PA1990_tr
                           translation of PA1990
                           608
                           99.34
                           99.67
                           0
                           3247.0
     

     
     
31781
                           gb|AAG05378.1|AE004625_8
                           (AE004625) probable peptidase [Pseudomonas aeruginosa PAO1]
                           608
                           99.34
                           99.67
                           0
                           3247.0
     

     
     
31782
                           gb|AAN66006.1|AE016229_7
                           (AE016775) prolyl oligopeptidase family protein [Pseudomonas putida KT2440]
                           628
                           51.11
                           62.10
                           36
                           1485.0
     

     
     
31783
                           gb|AAO54051.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           626
                           47.76
                           60.06
                           34
                           1404.0
     

     






      

          
GC ORFID: 43418How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1990Glimmer Score: 

          
Start: 1494783Stop: 1496609

          
Length: 1827


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1990 translation of PA1990Homolog Bit Score 1255.0

          
Other Homologs:  t_PA1990 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCGACTACGGCGACTGGCCGAGCGACTGGAGCGCCGAGCGCGCGGTGGCCGCCGGGCGCGATTTCAGC 
GAGCTGAAGGCGGCCCATGGCGGGCTGGCCTGGGTGGAATTCGATCCGGCCAGCGCGCGCTCGCGCCTGTAC 
CTGTGGCGCGACGGCGTGCTGGAGGAGCCCACCGCGCCGGACGGCTCGGTGCGCAGCCGGGTCTACGAGTAC 
GGCGGCGGCGCCTGCTGCGTGACGCTCGACGGGCTGGCCTGGGTCGACGAAACCGACCAGCAGGTACGCCGC 
TGGCGAGCGGGCCGCGCAGCCCAAGTGCTGGGCGGCGGGGCGCAGTGTCGCTACGGCGACCTGGCCTACGTC 
GATGCCTGGGATGCCCTGCTGGCGGTGGAAGAGAGCCATGGGCCGACCGGGGTCGTGCATCGCATCGTGCGC 
CTGGACGCCGATGGCGCGCGCCGGGTGCTGGTCGAGGGTGCCGATTTCTACGCCGCGCCGCGTGCCGCCGGC 
CAGGGGCGGCGGCTGGCCTGGATCGAATGGGACCGTCCGCACCAGCCCTGGACCGAGACCCGCCTGGGCCTG 
GCGGAGAATGGGCGTACGCGCTGCCTGGCCGGAGCCGGAGGCGGCGAGTCGATCCAGCAACCACGCTTCGAT 
CCCGCCGGCCGCCTTCACTGGCTGAGCGACCGCGACGGCTGGTGGCGTCCCTGCGCCGAGGTAGCGTTGGCC 
GGCCGCTTCGCCGATGCCGACCACGCTGGCGCGCCCTGGCAATTGGGCGCTTGCAGCTACCTGCCGCTGGGA 
GAGGGAAGGCTGCTGCTCAGTCGCGTCGAGGCCGGCGGCGGGCAACTGTTCCTGCGCGAAGCGGACGGCAGC 
GAGCGGCGCCTGGCCGCGGACTGGAACCGGTTCGCCGGACTGGCCGCGGATGCCCGGGCGTTCTACTGCATC 
GCGGCGGCGGCCGGACGCCTGCCGGCGCTGCTGGCGATCCACCGCGACGACCTGCGCGTCGAGGTGCTGCGT 
GGCGGCGAGCGACCGCTGGCGGAGGATGACCTGTCGCATCCGCAGGCCTTCGTCTATGGGCTGGGCAACGGC 
GAAAACGGCCACGGTTTCTTCTATCCGCCGCGCAATGCCCGCCGCCGCGTCGATCCCCGACGACCAGCGCCG 
CTGCTGGTGTGGCTGCATGGCGGACCGACCTCGATGCATTCGCCGGCGTTCGATGCCGGCCTGCAATTCTGG 
ACCCAGCGCGGTTTCGCCGTGGCGGCGCTGAACTACCGGGGCAGCAGCGGCTACGGCCGCGCCTATCGGCAG 
CGCTTGCGCGGCCAGTGGGGGCGCCTGGAGTTGCGCGATATCGAGGCCGCGCTGGCGCAGCTGGACGCGGAG 
GGATGGATCGACCGCGCCCGGGTCTTCGTCCGTGGCGCCAGCGCCGGAGGCTACAGCGCGCTGCGCGCCCTG 
GCTTGCCTCGATGGCCTGCGCGGCGGCGCCAGTCTCTATGGGGTCAGCGATCCGTTGGCGCTGGCGCGTTGC 
ACCCACAAGTTCGAAGGCGACTACCTCGACTGGCTGATCGGCGACCCGCAGCGCCAGCGCCGTCGCTACCTG 
GTGCGCAGCCCGGTGCTTCAGGTCGGGCGTATCCGCGCGCCGGTAGTGTTCTTCCAGGGCGGGCTCGACGCG 
GTGGTGGTGCCGGAGCAGACCGAGGCGATGGTCGCCGGCCTGCGGCGCAGCGGCGTGCGCGTGGAGTGCCAC 
CGCTATCCGCAGGAGCGCCACGGTTTCCGCCAGCCGGCCAATCGTGCCCATGCGCTGCTGGCGGAATGGCGC 
TTCTACCTGGTCCTGCTGGAGGATTGA