ViewGene

Locus Name:
GeneID:
Location:

GeneID:4159
TrivialName: PA14_08970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08970
PAO1 Ortholog Locus:PA4251
Sequence Length:540
Protein Length:179
Start: 764899
Stop: 765438
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07639.1|AE004841_17 (AE004841) 50S ribosomal protein L5 [Pseudomonas aeruginosa PAO1]
Identities = 179/179 (100%), Positives = 179/179 (100%)
Sequence:
ATGGCACGATTGAAAGAAATTTATCGGAAGGAAATCGCGCCCAAGCTGAAAGAAGAGCTTCAGCTGGCGAAC
GTGATGGAAGTTCCGCGCGTTACCAAAATCACCCTGAACATGGGTCTTGGCGAGGCGGTCGGTGACAAGAAG
ATCATCGAGAACGCCGTAGCCGATCTGGAAAAGATCACTGGTCAGAAGCCGGTCGTGACTTACGCTCGTAAG
TCCATCGCAGGCTTCAAGATCCGTGAAGGCTGGCCGATCGGCGTCAAGGTCACCCTGCGTAGCGACCGGATG
TACGAGTTCCTGGATCGTCTGCTGTCCATCTCCCTGCCGCGCGTGCGTGACTTCCGCGGCCTGAATGCCAAG
TCCTTCGATGGTCGCGGCAACTACAGCATGGGCGTGAAAGAGCAGATCATCTTCCCGGAAATCGATTACGAC
AAGATCGATGCGCTGCGTGGCCTGGACATCACCCTGACCACCACCGCTCGTACGGATGACGAAGGTCGCGCC
CTGCTGCGTGCTTTCAAATTCCCGTTCCGTAACTGA
Translation:
MARLKEIYRKEIAPKLKEELQLANVMEVPRVTKITLNMGLGEAVGDKKIIENAVADLEKITGQKPVVTYARK
SIAGFKIREGWPIGVKVTLRSDRMYEFLDRLLSISLPRVRDFRGLNAKSFDGRGNYSMGVKEQIIFPEIDYD
KIDALRGLDITLTTTARTDDEGRALLRAFKFPFRN*
AnnotationID:4166GeneID:4159
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 11:11:37
Gene Name:rplE
Confidence Code:2
GeneProduct:50S ribosomal protein L5
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0094,pfam00673,pfam00281
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54180.1| (AE016858) ribosomal protein L5 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 179

 Score =  338 bits (868), Expect = 7e-93
 Identities = 170/179 (94%), Positives = 175/179 (97%)

>gb|AAN66096.1|AE016238_14 (AE016775) ribosomal protein L5 [Pseudomonas putida KT2440]
          Length = 179

 Score =  338 bits (867), Expect = 9e-93
 Identities = 168/179 (93%), Positives = 178/179 (99%)

>gb|AAF40612.1| (AE002373) 50S ribosomal protein L5 [Neisseria meningitidis MC58]
          Length = 179

 Score =  266 bits (681), Expect = 3e-71
 Identities = 126/178 (70%), Positives = 159/178 (89%)

Structural Features:
COG0094, RplE, Ribosomal protein L5 
[Translation, ribosomal structure and biogenesis]
CD-Length = 180 residues,  99.4% aligned
Score =  277 bits (710), Expect = 6e-76
Identities = 122/179 (68%), Positives = 143/179 (79%)

pfam00673, Ribosomal_L5_C, ribosomal L5P family C-terminus.
CD-Length = 102 residues, 100.0% aligned
Score =  115 bits (289), Expect = 4e-27
Identities = 50/107 (46%), Positives = 63/107 (58%), Gaps = 17/107 (15%)

pfam00281, Ribosomal_L5, Ribosomal protein L5.
CD-Length = 56 residues, 100.0% aligned
Score = 76.5 bits (188), Expect = 2e-15
Identities = 37/57 (64%), Positives = 48/57 (84%), Gaps = 1/57 (1%)
Genomic Context:
Comment:
ReferenceID:8320
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25462
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36726
Author/Investigator(s): Cerretti DP, Dean D, Davis GR, Bedwell DM, Nomura M.
Title: The spc ribosomal protein operon of Escherichia coli: sequence and cotranscription of the ribosomal protein genes and a protein export gene.
PubMed: 6222285
MedLine:
Source:
Nucleic Acids Res. 1983 May 11;11(9):2599-616.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6222285
ReferenceID:36751
Author/Investigator(s): Chen R, Ehrke G.
Title: The primary structure of the 5 S RNA binding protein L5 of Escherichia coli ribosomes.
PubMed: 791672
MedLine:
Source:
FEBS Lett. 1976 Oct 15;69(1):240-5.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=77048835&dopt=Abstract
ReferenceID:38087
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type: (text/plain)
Data:4159_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4159

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6427 PA4251_tr translation of PA4251 179 99.99 99.99 0 901.0
175900 gb|AAG07639.1|AE004841_17 (AE004841) 50S ribosomal protein L5 [Pseudomonas aeruginosa PAO1] 179 99.99 99.99 0 901.0
175901 gb|AAO54180.1| (AE016858) ribosomal protein L5 [Pseudomonas syringae pv. tomato str. DC3000] 179 94.97 97.76 0 868.0
175902 gb|AAN66096.1|AE016238_14 (AE016775) ribosomal protein L5 [Pseudomonas putida KT2440] 179 93.85 99.44 0 867.0
175904 gb|AAF40612.1| (AE002373) 50S ribosomal protein L5 [Neisseria meningitidis MC58] 179 70.39 88.82 0 681.0
GC ORFID: 47161How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4251Glimmer Score:
Start: 4189040Stop: 4188501
Length: 540
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4251 translation of PA4251Homolog Bit Score 351.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5197 (ORF: BLASTX 337.0), t_PA4251 (ORF: GLIMMER)
GC ORF Sequence
ATGGCACGATTGAAAGAAATTTATCGGAAGGAAATCGCGCCCAAGCTGAAAGAAGAGCTTCAGCTGGCGAAC
GTGATGGAAGTTCCGCGCGTTACCAAAATCACCCTGAACATGGGTCTTGGCGAGGCGGTCGGTGACAAGAAG
ATCATCGAGAACGCCGTAGCCGATCTGGAAAAGATCACTGGTCAGAAGCCGGTCGTGACTTACGCTCGTAAG
TCCATCGCAGGCTTCAAGATCCGTGAAGGCTGGCCGATCGGCGTCAAGGTCACCCTGCGTAGCGACCGGATG
TACGAGTTCCTGGATCGTCTGCTGTCCATCTCCCTGCCGCGCGTGCGTGACTTCCGCGGCCTGAATGCCAAG
TCCTTCGATGGTCGCGGCAACTACAGCATGGGCGTGAAAGAGCAGATCATCTTCCCGGAAATCGATTACGAC
AAGATCGATGCGCTGCGTGGCCTGGACATCACCCTGACCACCACCGCTCGTACGGATGACGAAGGTCGCGCC
CTGCTGCGTGCTTTCAAATTCCCGTTCCGTAACTGA