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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG07639.1|AE004841_17 (AE004841) 50S ribosomal protein L5 [Pseudomonas aeruginosa PAO1]
Identities = 179/179 (100%), Positives = 179/179 (100%)
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Sequence:
ATGGCACGATTGAAAGAAATTTATCGGAAGGAAATCGCGCCCAAGCTGAAAGAAGAGCTTCAGCTGGCGAAC
GTGATGGAAGTTCCGCGCGTTACCAAAATCACCCTGAACATGGGTCTTGGCGAGGCGGTCGGTGACAAGAAG
ATCATCGAGAACGCCGTAGCCGATCTGGAAAAGATCACTGGTCAGAAGCCGGTCGTGACTTACGCTCGTAAG
TCCATCGCAGGCTTCAAGATCCGTGAAGGCTGGCCGATCGGCGTCAAGGTCACCCTGCGTAGCGACCGGATG
TACGAGTTCCTGGATCGTCTGCTGTCCATCTCCCTGCCGCGCGTGCGTGACTTCCGCGGCCTGAATGCCAAG
TCCTTCGATGGTCGCGGCAACTACAGCATGGGCGTGAAAGAGCAGATCATCTTCCCGGAAATCGATTACGAC
AAGATCGATGCGCTGCGTGGCCTGGACATCACCCTGACCACCACCGCTCGTACGGATGACGAAGGTCGCGCC
CTGCTGCGTGCTTTCAAATTCCCGTTCCGTAACTGA |
Translation:
MARLKEIYRKEIAPKLKEELQLANVMEVPRVTKITLNMGLGEAVGDKKIIENAVADLEKITGQKPVVTYARK
SIAGFKIREGWPIGVKVTLRSDRMYEFLDRLLSISLPRVRDFRGLNAKSFDGRGNYSMGVKEQIIFPEIDYD
KIDALRGLDITLTTTARTDDEGRALLRAFKFPFRN* |
AnnotationID:4166 | GeneID:4159 |
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Modification Date/Time: |
2005-04-03 11:11:37 |
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GeneProduct: | 50S ribosomal protein L5 |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (26) Translation, post-translational modification, degradation |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | translation, ribosomal structure and biogenesis |
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Homology: | >gb|AAO54180.1| (AE016858) ribosomal protein L5 [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 179
Score = 338 bits (868), Expect = 7e-93
Identities = 170/179 (94%), Positives = 175/179 (97%)
>gb|AAN66096.1|AE016238_14 (AE016775) ribosomal protein L5 [Pseudomonas putida KT2440]
Length = 179
Score = 338 bits (867), Expect = 9e-93
Identities = 168/179 (93%), Positives = 178/179 (99%)
>gb|AAF40612.1| (AE002373) 50S ribosomal protein L5 [Neisseria meningitidis MC58]
Length = 179
Score = 266 bits (681), Expect = 3e-71
Identities = 126/178 (70%), Positives = 159/178 (89%)
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Structural Features: | COG0094, RplE, Ribosomal protein L5
[Translation, ribosomal structure and biogenesis]
CD-Length = 180 residues, 99.4% aligned
Score = 277 bits (710), Expect = 6e-76
Identities = 122/179 (68%), Positives = 143/179 (79%)
pfam00673, Ribosomal_L5_C, ribosomal L5P family C-terminus.
CD-Length = 102 residues, 100.0% aligned
Score = 115 bits (289), Expect = 4e-27
Identities = 50/107 (46%), Positives = 63/107 (58%), Gaps = 17/107 (15%)
pfam00281, Ribosomal_L5, Ribosomal protein L5.
CD-Length = 56 residues, 100.0% aligned
Score = 76.5 bits (188), Expect = 2e-15
Identities = 37/57 (64%), Positives = 48/57 (84%), Gaps = 1/57 (1%) |
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