ViewGene

Locus Name:
GeneID:
Location:

GeneID:4158
TrivialName: PA14_28090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28090
PAO1 Ortholog Locus:PA2784
Sequence Length:558
Protein Length:185
Start: 2432544
Stop: 2431987
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06172.1|AE004706_2 (AE004706) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 181/185 (97%), Positives = 182/185 (98%)
Sequence:
ATGACAAGCGACCGCCTGGCCGGCTACAGCCGCCTGATGGCTACCCTGACCCTGCTGTTGATCGCCGGCATG
CTGCTGCTCAACGCCGCGAGCTGGATCTTCCCCGACCTCGCCAGCGAGCACGGCCTCGGCTTCGCCCTCACT
GCCACCGGCGTCGCCGGCGACCTCGGCGTTGCGGCGCGAGACATGCCGCTCTGGCAGGCCCTCGGCGGCATC
CTCCTGTCGAGCCTGCCGCTGCTGGTCCTGGCCAGCGGACTGCAAGCGCTGCGGCGGCTGTTCCAGCACTAC
GGGCGCGGCGAGTATTTCTGCGAAGAAGCCGCGGCGCTGCTCGGCAAGGTCGGCCTGTGCCTGGCTTGCTGG
GTGCTGGCGAACTTCCTGCTGGAGCCGCTGCTGACGGTCTGGGTCACCTTCCTCCAACCCCAGGGGCAACGC
ATCGTCAGTCTCAGCTTCGGTTCGGCGGAACTGGTCAGCCTGTTCGCCGCCGCCTCGGTGATGGTGATCGCG
CGCATCCAGCGCAAGGCCGCCCTGCTCGCCGAGGAAAACCGCCAGTTCGTCTGA
Translation:
MTSDRLAGYSRLMATLTLLLIAGMLLLNAASWIFPDLASEHGLGFALTATGVAGDLGVAARDMPLWQALGGI
LLSSLPLLVLASGLQALRRLFQHYGRGEYFCEEAAALLGKVGLCLACWVLANFLLEPLLTVWVTFLQPQGQR
IVSLSFGSAELVSLFAAASVMVIARIQRKAALLAEENRQFV*
AnnotationID:4165GeneID:4158
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 03:03:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2784
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8318
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25460
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36272
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4158_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4158

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6426 PA2784_tr translation of PA2784 185 97.83 98.37 0 901.0
175899 gb|AAG06172.1|AE004706_2 (AE004706) hypothetical protein PA2784 [Pseudomonas aeruginosa PAO1] 185 97.83 98.37 0 901.0
GC ORFID: 47160How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2784Glimmer Score:
Start: 2521382Stop: 2521939
Length: 558
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2784 translation of PA2784Homolog Bit Score 351.0
Other Homologs: t_PA2784 (ORF: GLIMMER)
GC ORF Sequence
ATGACAAGCGACCGCCTGGCCGGCTACAGCCGCCTGATGGCTACCCTGACCCTGCTGTTGATCGCCGGCATG
CTGCTGCTCAACGCCGCGAGCTGGATCTTCCCCGACCTCGCCAGCGAGCACGGCCTCGGCTTCGCCCTCACT
GCCACCGGCGTCGCCGGCGACCTCGGCGTTGCGGCGCGAGACATGCCGCTCTGGCAGGCCCTCGGCGGCATC
CTCCTGTCGAGCCTGCCGCTGCTGGTCCTGGCCAGCGGACTGCAAGCGCTGCGGCGGCTGTTCCAGCACTAC
GGGCGCGGCGAGTATTTCTGCGAAGAAGCCGCGGCGCTGCTCGGCAAGGTCGGCCTGTGCCTGGCTTGCTGG
GTGCTGGCGAACTTCCTGCTGGAGCCGCTGCTGACGGTCTGGGTCACCTTCCTCCAACCCCAGGGGCAACGC
ATCGTCAGTCTCAGCTTCGGTTCGGCGGAACTGGTCAGCCTGTTCGCCGCCGCCTCGGTGATGGTGATCGCG
CGCATCCAGCGCAAGGCCGCCCTGCTCGCCGAGGAAAACCGCCAGTTCGTCTGA