ViewGene
Locus Name:
GeneID:
Location:

GeneID:4157
TrivialName: PA14_28220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28220
PAO1 Ortholog Locus:PA2773
Sequence Length:522
Protein Length:173
Start: 2442240
Stop: 2442761
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06161.1|AE004705_3 (AE004705) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 172/173 (99%), Positives = 172/173 (99%)
Sequence:
GTGTCCAGGTTGATCATGCCCGGAGGGCCGTTGTCGCAAGAATCCGATGTCCGGATCTTCTGTTCAGCCAAG
GAGCGGCTGGACTTCTACCGGCGGGAAATCCACTACGAGACGGGCCAGCTATCCAGTCGGACCAACGCCTAC
CTGACGGCACAGTCGTTCCTGGTCATCGCCTACGCCTCGTCGATGGCCAACCTGAACCCGGCCTGGGGCGAA
CTGTTCACCCTGGTAGTGCCGGCGCTCCTGGCACTGCTCGGGATCGTCAATTCCCTGCATGCCTGGCCGGGC
ATCCAGGCATCCTCGGAGATCATCTGCCACTGGCAGTTCAAGCAGTCCTGCCTGCTGCACAGCGATCCGGAA
ATCGGCCTGGCCTACGATGATTCGCCATTGTTCAGCGAACGCGAGGTCAACCGCGGCAGCTTCGAGAAAACC
TTGCTGTTCTCGCGACGCGTGCCGTTTCTGTTCGCCGGCTTCTGGTGTGCGCTGGGCGTGTTTTCGCTTTGG
CTGCAACTGGCCGGCTAG
Translation:
MSRLIMPGGPLSQESDVRIFCSAKERLDFYRREIHYETGQLSSRTNAYLTAQSFLVIAYASSMANLNPAWGE
LFTLVVPALLALLGIVNSLHAWPGIQASSEIICHWQFKQSCLLHSDPEIGLAYDDSPLFSEREVNRGSFEKT
LLFSRRVPFLFAGFWCALGVFSLWLQLAG*
AnnotationID:4164GeneID:4157
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 21:09:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2773
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15034




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25458




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4157
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6425
                           PA2773_tr
                           translation of PA2773
                           173
                           99.42
                           99.42
                           0
                           900.0
     

     
     
175896
                           gb|AAG06161.1|AE004705_3
                           (AE004705) hypothetical protein PA2773 [Pseudomonas aeruginosa PAO1]
                           173
                           98.84
                           99.42
                           0
                           897.0
     

     
     
175897
                           gb|AAO58812.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           176
                           59.65
                           76.13
                           3
                           524.0
     

     
     
175898
                           gb|AAN68332.1|AE016467_2
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           175
                           57.71
                           76.57
                           3
                           519.0
     

     






      

          
GC ORFID: 47159How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2773Glimmer Score: 

          
Start: 2511686Stop: 2511165

          
Length: 522


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2773 translation of PA2773Homolog Bit Score 351.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2279 (ORF: BLASTX 208.0), t_PA2773 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCCAGGTTGATCATGCCCGGAGGGCCGTTGTCGCAAGAATCCGATGTCCGGATCTTCTGTTCAGCCAAG 
GAGCGGCTGGACTTCTACCGGCGGGAAATCCACTACGAGACGGGCCAGCTATCCAGTCGGACCAACGCCTAC 
CTGACGGCACAGTCGTTCCTGGTCATCGCCTACGCCTCGTCGATGGCCAACCTGAACCCGGCCTGGGGCGAA 
CTGTTCACCCTGGTAGTGCCGGCGCTCCTGGCACTGCTCGGGATCGTCAATTCCCTGCATGCCTGGCCGGGC 
ATCCAGGCATCCTCGGAGATCATCTGCCACTGGCAGTTCAAGCAGTCCTGCCTGCTGCACAGCGATCCGGAA 
ATCGGCCTGGCCTACGATGATTCGCCATTGTTCAGCGAACGCGAGGTCAACCGCGGCAGCTTCGAGAAAACC 
TTGCTGTTCTCGCGACGCGTGCCGTTTCTGTTCGCCGGCTTCTGGTGTGCGCTGGGCGTGTTTTCGCTTTGG 
CTGCAACTGGCCGGCTAG