ViewGene

Locus Name:
GeneID:
Location:

GeneID:4156
TrivialName: PA14_39230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39230
PAO1 Ortholog Locus:PA1955
Sequence Length:570
Protein Length:189
Start: 3493209
Stop: 3493778
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05343.1|AE004622_5 (AE004622) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 187/189 (98%), Positives = 188/189 (99%)
Sequence:
ATGAAGCGCCTGTCCGCCCTCCTCCTCGCCTTCGCCTGTATCGCGTCGCTCCAGGCCGACCCGCTGGCCTCA
CGCAATCGCGCCAGCATCGATGCCAGCGGCACCTACCGCGGCAACTTCGCCCTCAACCAGGCCGCCGGCGAC
GCCCAGCAACAGAGCAACGTTCGTGTCGTCGCGGTCGGCTCCGCGGCCCTCGTCGGCAGCGACCAGCGCCAG
CATCTGCAACTCGACGCCAGCCAGCCGATCGCGGCCAGCGCCAGCATCTCGGGGGCGGCGCTGCGCGGCAGC
GGCATCCTCGGCGTCAACCAGGGCGCCGGCCTCGGCAACCAACAGATCAACGCCTTCCGGCTGAGCGTCAGC
AACGGCCCGGAAAGCCTGGATGACAGCGTTCTCGCGCAAAGCGTGGCGCTGACCAAAGTCTCCGGTTCGGCC
ACTCCGGTCCCGGGAGGACGCAGCGTCTCGACGGACGATCGCGCCTTCGCCGGGAGCAGCGGCGTGGTGCAG
GTGAACCAGAGCGCTGGGGTGGGCAATCAGTCGATGAACACCCTCAGCGTCAGGGTCATGGAATGA
Translation:
MKRLSALLLAFACIASLQADPLASRNRASIDASGTYRGNFALNQAAGDAQQQSNVRVVAVGSAALVGSDQRQ
HLQLDASQPIAASASISGAALRGSGILGVNQGAGLGNQQINAFRLSVSNGPESLDDSVLAQSVALTKVSGSA
TPVPGGRSVSTDDRAFAGSSGVVQVNQSAGVGNQSMNTLSVRVME*
AnnotationID:4163GeneID:4156
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:31
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1955
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8314
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25457
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4156

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6424 PA1955_tr translation of PA1955 189 98.94 99.47 0 901.0
175894 gb|AAG05343.1|AE004622_5 (AE004622) hypothetical protein PA1955 [Pseudomonas aeruginosa PAO1] 189 98.94 99.47 0 901.0
175895 gb|AAN68465.1|AE016479_5 (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440] 194 51.03 63.91 7 408.0
GC ORFID: 47158How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1955Glimmer Score:
Start: 1460702Stop: 1460133
Length: 570
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1955 translation of PA1955Homolog Bit Score 351.0
Other Homologs: t_PA1955 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGCGCCTGTCCGCCCTCCTCCTCGCCTTCGCCTGTATCGCGTCGCTCCAGGCCGACCCGCTGGCCTCA
CGCAATCGCGCCAGCATCGATGCCAGCGGCACCTACCGCGGCAACTTCGCCCTCAACCAGGCCGCCGGCGAC
GCCCAGCAACAGAGCAACGTTCGTGTCGTCGCGGTCGGCTCCGCGGCCCTCGTCGGCAGCGACCAGCGCCAG
CATCTGCAACTCGACGCCAGCCAGCCGATCGCGGCCAGCGCCAGCATCTCGGGGGCGGCGCTGCGCGGCAGC
GGCATCCTCGGCGTCAACCAGGGCGCCGGCCTCGGCAACCAACAGATCAACGCCTTCCGGCTGAGCGTCAGC
AACGGCCCGGAAAGCCTGGATGACAGCGTTCTCGCGCAAAGCGTGGCGCTGACCAAAGTCTCCGGTTCGGCC
ACTCCGGTCCCGGGAGGACGCAGCGTCTCGACGGACGATCGCGCCTTCGCCGGGAGCAGCGGCGTGGTGCAG
GTGAACCAGAGCGCTGGGGTGGGCAATCAGTCGATGAACACCCTCAGCGTCAGGGTCATGGAATGA