ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4155

TrivialName: PA14_39960

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_39960

PAO1 Ortholog Locus: PA1900

Sequence Length: 489

Protein Length: 162

Start: 3561208

Stop: 3560720

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05289.1|AE004616_3 (AE004616) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1] Identities = 162/162 (100%), Positives = 162/162 (100%)

Sequence:

ATGCTCGATAATGCTATTCCCCAAGGTTTCGAAGACGCCGTGGAGTTGCGCAGGAAGAATCGCGAGACGGTG
GTCAAGTATATGAACACCAAAGGCCAGGATCGCCTGCGCCGCCATGAACTTTTCGTCGAGGACGGCTGTGGC
GGTTTATGGACCACCGATACCGGCTCGCCCATCGTCATTCGTGGCAAGGACAAGCTGGCCGAGCACGCGGTG
TGGTCGCTGAAATGCTTCCCGGATTGGGAGTGGTACAACATCAAGGTCTTCGAGACCGACGATCCCAACCAC
TTCTGGGTCGAGTGCGACGGCCACGGCAAGATCCTCTTCCCCGGGTATCCCGAGGGTTACTACGAGAACCAC
TTCCTGCATTCCTTCGAGCTGGACGACGGCAAGATCAAGCGCAACCGCGAATTCATGAACGTCTTCCAGCAA
TTGCGCGCCCTGAGCATTCCGGTCCCGCAGATCAAACGCGAAGGCATTCCCACCTGA

Translation:

MLDNAIPQGFEDAVELRRKNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAV
WSLKCFPDWEWYNIKVFETDDPNHFWVECDGHGKILFPGYPEGYYENHFLHSFELDDGKIKRNREFMNVFQQ
LRALSIPVPQIKREGIPT*

AnnotationID:4162 GeneID:4155

AnnotatorUID: danlee

Modification Date/Time: 2003-11-13 14:02:36

Gene Name: phzB2

Confidence Code: 1

GeneProduct: probable phenazine biosynthesis protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (23) Secreted Factors (toxins, enzymes, alginate)

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Phenazine biosynthesis.

Homology:

corresponds to PA1900 of PAO1 (based on sequence and genomic context).

Structural Features:

Genomic Context:

Operon phzA2B2C2D2E2F2G2.

Comment:

ReferenceID:8312

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25455

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:4155

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6420 PA1900_tr translation of PA1900 162 99.99 99.99 0 901.0

175879 gb|AAG05289.1|AE004616_3 (AE004616) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1] 162 99.99 99.99 0 901.0

175880 gb|AAD45625.1|AF092442_2 (AF092442) phenazine biosynthesis protein PhzB [Pseudomonas aeruginosa] 162 99.99 99.99 0 901.0

6421 PA4211_tr translation of PA4211 162 91.35 92.59 0 822.0

175882 gb|AAC64490.1| (AF005404) PhzB [Pseudomonas aeruginosa] 162 91.35 92.59 0 822.0

GC ORFID: `47157`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1900`	Glimmer Score:
Start: `1392702`	Stop: `1393190`
Length: `489`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1900 translation of PA1900`	Homolog Bit Score `351.0`
Other Homologs: `t_PA4211 (ORF: BLASTX 321.0), t_PA1899 (ORF: BLASTX 239.0), t_PA4210 (ORF: BLASTX 231.0), t_PA1900 (ORF: GLIMMER)`
GC ORF Sequence
`ATGCTCGATAATGCTATTCCCCAAGGTTTCGAAGACGCCGTGGAGTTGCGCAGGAAGAATCGCGAGACGGTG GTCAAGTATATGAACACCAAAGGCCAGGATCGCCTGCGCCGCCATGAACTTTTCGTCGAGGACGGCTGTGGC GGTTTATGGACCACCGATACCGGCTCGCCCATCGTCATTCGTGGCAAGGACAAGCTGGCCGAGCACGCGGTG TGGTCGCTGAAATGCTTCCCGGATTGGGAGTGGTACAACATCAAGGTCTTCGAGACCGACGATCCCAACCAC TTCTGGGTCGAGTGCGACGGCCACGGCAAGATCCTCTTCCCCGGGTATCCCGAGGGTTACTACGAGAACCAC TTCCTGCATTCCTTCGAGCTGGACGACGGCAAGATCAAGCGCAACCGCGAATTCATGAACGTCTTCCAGCAA TTGCGCGCCCTGAGCATTCCGGTCCCGCAGATCAAACGCGAAGGCATTCCCACCTGA`