ViewGene
Locus Name:
GeneID:
Location:

GeneID:4154
TrivialName: PA14_72820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72820
PAO1 Ortholog Locus:
Sequence Length:702
Protein Length:233
Start: 6486029
Stop: 6486730
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08905.1|AE004964_8 (AE004964) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 177/181 (97%), Positives = 178/181 (98%)
Sequence:
ATGCCTGCCGCCATTCGCATCCTTCTCCTGGCCCTGGCCGTGCTTGCCGGCATCGGTGCCGCTGCCATCCAG
GCCGAGGATACGCCCTGCGCCACAGCCGCGGAATGCAACACGCGCGGCACCCAGGCTTATCGACAGGGGAGT
TATCCACAGGTGCTGGACGCCTTCGCCTGGCAATTGCGCCTGGCCGAGCGCCAGGAACAGGGCGGAGCCGAC
TCGGAACCGGCGCTGAACAATCTCGCGCTGACCAGCCTCAAGGCCGGGCAACCGGGACGCGCCCGCGCCTGG
ATGAACCTGGCGCTGGATCGCGGCTACAGCGGCAAGGCCACGCGCCACAACCTGGAACAGGTTGCCCTGAAA
GTTGACTATCCGTCCCTCCAGGGCCTCGCCGGGCACTACCTGCGCTACGCCGGGCAGGCCGAATGGGAAAGC
CTGCAGATCGAACCGGTGAAGGGCGGCTACCAGGCGAGCTTCGCCCTGATGCGCATCGGCAATCCGGAGAAA
CTGATGGAATATGGGCCCGCGGCGGTCGGCGAGTGGTCGGCTGGAGGGGCAAGGCGCCCTCTACCGACTGCG
CAGCGAAGGCCTGGGCGCCGGCTGCAGCCTGCTGGTATGGCAGGAAGGCATCGACCTGCGAGTGGTGGAGAG
CCTTGGCGGGGACTGCCAGGGTTACGGCGGCATGGGCATCGCCGCCGCCGGTAA
Translation:
MPAAIRILLLALAVLAGIGAAAIQAEDTPCATAAECNTRGTQAYRQGSYPQVLDAFAWQLRLAERQEQGGAD
SEPALNNLALTSLKAGQPGRARAWMNLALDRGYSGKATRHNLEQVALKVDYPSLQGLAGHYLRYAGQAEWES
LQIEPVKGGYQASFALMRIGNPEKLMEYGPAAVGEWSAGGARRPLPTAQRRPGRRLQPAGMAGRHRPASGGE
PWRGLPGLRRHGHRRRR*
AnnotationID:4161GeneID:4154
AnnotatorUID: danlee
Modification Date/Time: 2006-02-08 16:04:11
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
Confirmed frame-shift results in PAO1 PA5520 sequence spit into two overlapping ORFS: 
PA14_72820 (GeneID 4154) and PA14_72830 (GeneID 6976).


















    ReferenceID:8310




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25453




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4154
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6419
                           PA5520_tr
                           translation of PA5520
                           259
                           73.35
                           77.60
                           38
                           886.0
     

     
     
175878
                           gb|AAG08905.1|AE004964_8
                           (AE004964) hypothetical protein PA5520 [Pseudomonas aeruginosa PAO1]
                           259
                           73.35
                           77.60
                           38
                           886.0
     

     






      

          
GC ORFID: 47156How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5520Glimmer Score: 

          
Start: 5749718Stop: 5750419

          
Length: 702


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5520 translation of PA5520Homolog Bit Score 352.0

          
Other Homologs:  t_PA5520 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGCCGCCATTCGCATCCTTCTCCTGGCCCTGGCCGTGCTTGCCGGCATCGGTGCCGCTGCCATCCAG 
GCCGAGGATACGCCCTGCGCCACAGCCGCGGAATGCAACACGCGCGGCACCCAGGCTTATCGACAGGGGAGT 
TATCCACAGGTGCTGGACGCCTTCGCCTGGCAATTGCGCCTGGCCGAGCGCCAGGAACAGGGCGGAGCCGAC 
TCGGAACCGGCGCTGAACAATCTCGCGCTGACCAGCCTCAAGGCCGGGCAACCGGGACGCGCCCGCGCCTGG 
ATGAACCTGGCGCTGGATCGCGGCTACAGCGGCAAGGCCACGCGCCACAACCTGGAACAGGTTGCCCTGAAA 
GTTGACTATCCGTCCCTCCAGGGCCTCGCCGGGCACTACCTGCGCTACGCCGGGCAGGCCGAATGGGAAAGC 
CTGCAGATCGAACCGGTGAAGGGCGGCTACCAGGCGAGCTTCGCCCTGATGCGCATCGGCAATCCGGAGAAA 
CTGATGGAATATGGGCCCGCGGCGGTCGGCGAGTGGTCGGCTGGAGGGGCAAGGCGCCCTCTACCGACTGCG 
CAGCGAAGGCCTGGGCGCCGGCTGCAGCCTGCTGGTATGGCAGGAAGGCATCGACCTGCGAGTGGTGGAGAG 
CCTTGGCGGGGACTGCCAGGGTTACGGCGGCATGGGCATCGCCGCCGCCGGTAA