ViewGene
Locus Name:
GeneID:
Location:

GeneID:4149
TrivialName: PA14_09470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09470
PAO1 Ortholog Locus:PA4211
Sequence Length:489
Protein Length:162
Start: 812617
Stop: 812129
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07598.1|AE004838_2 (AE004838) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1]
Identities = 161/162 (99%), Positives = 162/162 (100%)
Sequence:
ATGCCTGACACGACAAATCCAATCGGTTTCACCGATGCCAACGAACTTCGCGAAAAGAATCGCGCCACCGTC
GAGAAGTACATGAATACCAAAGGCCAGGACCGCCTGCGCCGCCATGAACTTTTCGTCGAGGATGGCTGTGGC
GGTTTATGGACCACCGATACCGGCTCGCCCATCGTCATTCGTGGCAAAGACAAACTTGCGGAACATGCCGTC
TGGTCATTGAAGTGCTTTCCCGATTGGGAGTGGTACAACATAAATATATTCGGAACCGACGACCCCAATCAT
TTCTGGGTCGAATGCGACGGTCACGGCAAGATTCTTTTCCCCGGATATCCCGAAGGTTATTACGAAAACCAC
TTCCTGCATTCCTTCGAACTTGAAGACGGCAAGATCAAGCGCAACCGCGAATTCATGAACGTCTTCCAGCAA
TTGCGCGCCTTGAGCATTCCGGTCCCGGAAATAAAACGCGAAGGCATTCCCACTTGA
Translation:
MPDTTNPIGFTDANELREKNRATVEKYMNTKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAV
WSLKCFPDWEWYNINIFGTDDPNHFWVECDGHGKILFPGYPEGYYENHFLHSFELEDGKIKRNREFMNVFQQ
LRALSIPVPEIKREGIPT*
AnnotationID:4156GeneID:4149
AnnotatorUID: danlee
Modification Date/Time: 2003-11-12 16:04:26
Gene Name:phzB1
Confidence Code:1
GeneProduct:probable phenazine biosynthesis protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Phenazine biosynthesis.
Homology:
corresponds to PA4211 of PAO1 (based on sequence and genomic
context).
Structural Features:






   
Genomic Context:
Operon phzA1B1C1D1E1F1G1






   
Comment:


















    ReferenceID:8300




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25443




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4149
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6409
                           PA4211_tr
                           translation of PA4211
                           162
                           99.38
                           99.99
                           0
                           905.0
     

     
     
175619
                           gb|AAG07598.1|AE004838_2
                           (AE004838) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1]
                           162
                           99.38
                           99.99
                           0
                           905.0
     

     
     
175620
                           gb|AAC64490.1|
                           (AF005404) PhzB [Pseudomonas aeruginosa]
                           162
                           99.38
                           99.99
                           0
                           905.0
     

     
     
6410
                           PA1900_tr
                           translation of PA1900
                           162
                           90.74
                           92.59
                           0
                           819.0
     

     
     
175621
                           gb|AAG05289.1|AE004616_3
                           (AE004616) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1]
                           162
                           90.74
                           92.59
                           0
                           819.0
     

     






      

          
GC ORFID: 47151How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4211Glimmer Score: 

          
Start: 4141320Stop: 4141808

          
Length: 489


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4211 translation of PA4211Homolog Bit Score 353.0

          
Other Homologs:  t_PA1900 (ORF: BLASTX 320.0), t_PA1899 (ORF: BLASTX 239.0), t_PA4210 (ORF: BLASTX 231.0), t_PA4211 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGACACGACAAATCCAATCGGTTTCACCGATGCCAACGAACTTCGCGAAAAGAATCGCGCCACCGTC 
GAGAAGTACATGAATACCAAAGGCCAGGACCGCCTGCGCCGCCATGAACTTTTCGTCGAGGATGGCTGTGGC 
GGTTTATGGACCACCGATACCGGCTCGCCCATCGTCATTCGTGGCAAAGACAAACTTGCGGAACATGCCGTC 
TGGTCATTGAAGTGCTTTCCCGATTGGGAGTGGTACAACATAAATATATTCGGAACCGACGACCCCAATCAT 
TTCTGGGTCGAATGCGACGGTCACGGCAAGATTCTTTTCCCCGGATATCCCGAAGGTTATTACGAAAACCAC 
TTCCTGCATTCCTTCGAACTTGAAGACGGCAAGATCAAGCGCAACCGCGAATTCATGAACGTCTTCCAGCAA 
TTGCGCGCCTTGAGCATTCCGGTCCCGGAAATAAAACGCGAAGGCATTCCCACTTGA