ViewGene
Locus Name:
GeneID:
Location:

GeneID:4148
TrivialName: PA14_39540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39540
PAO1 Ortholog Locus:PA1931
Sequence Length:513
Protein Length:170
Start: 3520704
Stop: 3520192
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05319.1|AE004619_6 (AE004619) probable ferredoxin [Pseudomonas aeruginosa PAO1]
Identities = 170/170 (100%), Positives = 170/170 (100%)
Sequence:
ATGACCAATCCGGAGCCGGCGGACCTGCCGATCAGCCTGCTGATCAATGGCCAGCGCCGAGAGCTGAGAGTA
CCCCCGTGGCTGACGCTGCTCGACCTGCTGCGCGAGCGGCTCGACCTGGTGGGCAGCAAGAAGGGCTGCGAC
CACGGCCAATGCGGCGCTTGCACGGTGTTGCGCAACGGTCGCCGGATCAACGCCTGCCTGACGCTGGCGGTG
ATGTGCGACGGCGATGCACTGACTACCATCGAAGGTCTGGCCGAGGGTGATCGCCTGCATCCCCTGCAACAG
GCGTTCATCCGCCATGATGCCTTCCAGTGCGGCTACTGCACGCCCGGACAGATCTGTTCGGCCCTTGGCCTG
GCGAGCGAGGGGCGGGCGCGCTCGCGGGCGGAGATCCGCGAGGGCATGAGCGGCAACCTGTGCCGCTGCGGC
GCCTACGGCAATATCCTCGACGCCGTGGAAGACGCCTTGCCGCTGCTCGATCGCGACGGACAGGGAGGGCAG
CGCGCATGA
Translation:
MTNPEPADLPISLLINGQRRELRVPPWLTLLDLLRERLDLVGSKKGCDHGQCGACTVLRNGRRINACLTLAV
MCDGDALTTIEGLAEGDRLHPLQQAFIRHDAFQCGYCTPGQICSALGLASEGRARSRAEIREGMSGNLCRCG
AYGNILDAVEDALPLLDRDGQGGQRA*
AnnotationID:4155GeneID:4148
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:11
Gene Name:
Confidence Code:3
GeneProduct:putative ferredoxin
Cell Localization:()
Synonyms:PA1931
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative oxidoreductase with iron-sulfur subunit
Functional Category Confidence Code:5
COGs:COG2080,pfam01799
Secondary Functional Category(ies):carbon compound catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58098.1| (AE016872) iron-sulfur cluster-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 176

 Score =  257 bits (656), Expect = 2e-68
 Identities = 123/160 (76%), Positives = 138/160 (86%), Gaps = 3/160 (1%)

>gb|AAM40392.1| (AE012207) ferredoxin [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 192

 Score =  226 bits (575), Expect = 6e-59
 Identities = 103/148 (69%), Positives = 127/148 (85%)

>dbj|BAB33739.1| (AP002551) putative xanthine dehydrogenase [Escherichia coli
           O157:H7]
          Length = 229

 Score =  199 bits (506), Expect = 6e-51
 Identities = 98/168 (58%), Positives = 117/168 (69%), Gaps = 15/168 (8%)








 
Structural Features:
COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs 
[Energy production and conversion]
CD-Length = 156 residues, 100.0% aligned
Score =  213 bits (544), Expect = 8e-57
Identities = 91/156 (58%), Positives = 110/156 (70%), Gaps = 1/156 (0%)

pfam01799, Fer2_2, [2Fe-2S] binding domain.
CD-Length = 76 residues, 100.0% aligned
Score =  102 bits (256), Expect = 2e-23
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 1/76 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8298




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25441




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32781




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4148_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4148
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6406
                           PA1931_tr
                           translation of PA1931
                           170
                           99.99
                           99.99
                           0
                           905.0
     

     
     
175508
                           gb|AAG05319.1|AE004619_6
                           (AE004619) probable ferredoxin [Pseudomonas aeruginosa PAO1]
                           170
                           99.99
                           99.99
                           0
                           905.0
     

     
     
175510
                           gb|AAN68915.1|AE016523_4
                           (AE016786) oxidoreductase, small subunit, putative [Pseudomonas putida KT2440]
                           176
                           69.31
                           78.97
                           7
                           633.0
     

     
     
175509
                           gb|AAO58098.1|
                           (AE016872) iron-sulfur cluster-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           182
                           68.68
                           76.92
                           18
                           648.0
     

     
     
175521
                           dbj|BAC47482.1|
                           (AP005942) oxidoreductase with iron-sulfur subunit [Bradyrhizobium japonicum USDA 110]
                           173
                           56.64
                           69.94
                           11
                           489.0
     

     






      

          
GC ORFID: 47150How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1931Glimmer Score: 

          
Start: 1433207Stop: 1433719

          
Length: 513


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1931 translation of PA1931Homolog Bit Score 353.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5392 (ORF: BLASTX 257.0), t_PA1602 (ORF: BLASTX 120.0), t_PA1931 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAATCCGGAGCCGGCGGACCTGCCGATCAGCCTGCTGATCAATGGCCAGCGCCGAGAGCTGAGAGTA 
CCCCCGTGGCTGACGCTGCTCGACCTGCTGCGCGAGCGGCTCGACCTGGTGGGCAGCAAGAAGGGCTGCGAC 
CACGGCCAATGCGGCGCTTGCACGGTGTTGCGCAACGGTCGCCGGATCAACGCCTGCCTGACGCTGGCGGTG 
ATGTGCGACGGCGATGCACTGACTACCATCGAAGGTCTGGCCGAGGGTGATCGCCTGCATCCCCTGCAACAG 
GCGTTCATCCGCCATGATGCCTTCCAGTGCGGCTACTGCACGCCCGGACAGATCTGTTCGGCCCTTGGCCTG 
GCGAGCGAGGGGCGGGCGCGCTCGCGGGCGGAGATCCGCGAGGGCATGAGCGGCAACCTGTGCCGCTGCGGC 
GCCTACGGCAATATCCTCGACGCCGTGGAAGACGCCTTGCCGCTGCTCGATCGCGACGGACAGGGAGGGCAG 
CGCGCATGA