ViewGene
Locus Name:
GeneID:
Location:

GeneID:4146
TrivialName: PA14_55550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55550
PAO1 Ortholog Locus:PA0675
Sequence Length:546
Protein Length:181
Start: 4944410
Stop: 4943865
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04064.1|AE004503_2 (AE004503) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1]
Identities = 181/181 (100%), Positives = 181/181 (100%)
Sequence:
ATGAGCGATTCGCGGCAAAGCGCGATGGTGAAGCTGTTCCTCGCCTCCTACGACGACTTCAAGGCGCGCCTG
AAACGGCGCCTGGGCTCCGAGGATCTGGCGTGCGACGTGCTGCACGAAACCTACCTGAGAGTCGACCGGCTG
GATGATGCGTTGGAGGTCAAGAAGCCTCAGGCCTACCTGTTCCGTATTGCCCTGAACATTGCCGCCGACCGC
CGCGAGGGCGACGCCCGCCTGCTCACCGGGGAGGAGGTGGCGGAGCTGTTGCAGGTGGCCGACGAAGGCCTC
GACCCGGAGCGCATCGTCGGCGGTCATGCCGAGATCCGTCGCCTGTTGGAGGCGCTCTGCGAACTGCCGGCG
CGGCGTCGGCAGATTCTCATCGCCTCGCGCCTGGAAGAGACGCCGCATGCGGAAATCTCCCGTCGCTTCGGC
ATTTCCACCCGCACCGTGGAGAAGGAACTCAAGGCCGCCCTGTGGTTCTGCGCGGAGCGCCTGGAAAGAAAA
GTCATCCAGAGGTTCGGTCCCGGGGCCGGAAAACCGTCATAA
Translation:
MSDSRQSAMVKLFLASYDDFKARLKRRLGSEDLACDVLHETYLRVDRLDDALEVKKPQAYLFRIALNIAADR
REGDARLLTGEEVAELLQVADEGLDPERIVGGHAEIRRLLEALCELPARRRQILIASRLEETPHAEISRRFG
ISTRTVEKELKAALWFCAERLERKVIQRFGPGAGKPS*
AnnotationID:4153GeneID:4146
AnnotatorUID: diggins
Modification Date/Time: 2006-01-20 07:07:19
Gene Name:
Confidence Code:3
GeneProduct:probable sigma-70 factor, ECF subfamily
Cell Localization:()
Synonyms:PA0675
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL45997.1| (AE008953) ECF family sigma factor [Agrobacterium tumefaciens str.
           C58 (U. Washington)]
          Length = 169

 Score =  102 bits (253), Expect = 1e-21
 Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 13/165 (7%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8294




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25437




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4146
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6402
                           PA0675_tr
                           translation of PA0675
                           181
                           99.99
                           99.99
                           0
                           906.0
     

     
     
175496
                           gb|AAG04064.1|AE004503_2
                           (AE004503) probable sigma-70 factor, ECF subfamily [Pseudomonas aeruginosa PAO1]
                           181
                           99.99
                           99.99
                           0
                           906.0
     

     
     
175497
                           gb|AAC15191.1|
                           (AF060193) extracytoplasmic function sigma factor [Pseudomonas aeruginosa]
                           181
                           98.34
                           99.44
                           0
                           894.0
     

     
     
175498
                           emb|CAE26777.1|
                           (BX572597) RNA polymerase ECF-type sigma factor, possible FecI [Rhodopseudomonas palustris CGA009]
                           181
                           53.03
                           71.82
                           0
                           472.0
     

     
     
175499
                           emb|CAE26790.1|
                           (BX572597) RNA polymerase ECF-type sigma factor, possible FecI [Rhodopseudomonas palustris CGA009]
                           186
                           41.39
                           61.82
                           8
                           383.0
     

     






      

          
GC ORFID: 47148How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0675Glimmer Score: 

          
Start: 9497Stop: 10042

          
Length: 546


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0675 translation of PA0675Homolog Bit Score 353.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAGCGATTCGCGGCAAAGCGCGATGGTGAAGCTGTTCCTCGCCTCCTACGACGACTTCAAGGCGCGCCTG 
AAACGGCGCCTGGGCTCCGAGGATCTGGCGTGCGACGTGCTGCACGAAACCTACCTGAGAGTCGACCGGCTG 
GATGATGCGTTGGAGGTCAAGAAGCCTCAGGCCTACCTGTTCCGTATTGCCCTGAACATTGCCGCCGACCGC 
CGCGAGGGCGACGCCCGCCTGCTCACCGGGGAGGAGGTGGCGGAGCTGTTGCAGGTGGCCGACGAAGGCCTC 
GACCCGGAGCGCATCGTCGGCGGTCATGCCGAGATCCGTCGCCTGTTGGAGGCGCTCTGCGAACTGCCGGCG 
CGGCGTCGGCAGATTCTCATCGCCTCGCGCCTGGAAGAGACGCCGCATGCGGAAATCTCCCGTCGCTTCGGC 
ATTTCCACCCGCACCGTGGAGAAGGAACTCAAGGCCGCCCTGTGGTTCTGCGCGGAGCGCCTGGAAAGAAAA 
GTCATCCAGAGGTTCGGTCCCGGGGCCGGAAAACCGTCATAA