ViewGene
Locus Name:
GeneID:
Location:

GeneID:4145
TrivialName: PA14_64010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64010
PAO1 Ortholog Locus:PA4841
Sequence Length:537
Protein Length:178
Start: 5705304
Stop: 5704768
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08226.1|AE004897_4 (AE004897) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 177/178 (99%), Positives = 178/178 (100%)
Sequence:
ATGGCCGCGCCGATCAGCGCCGAAGAGGTGGCCCACCGGGCCGCCTCCGACGCCGAACTCATCGCCTGGGTC
GACGAGCAGGACCGCCCGCTCGGTAGCCTGCCGCGCGCGGATCTGCGCGAGCGCGGGCTGATCGGTCGCGGC
ACCTTCATCCTGCTGTTCAACTCCGCCGGCGAGCTGTGCGTGCAGCGCCGGACCCTGAGCAAGGCGGTCTAT
CCGGGGTACTGGGACCTCGCCGCCGGCGGCATGGTCCAGGCCGGCGAGCCCTACGCCGACTCCGCCGCCCGC
GAACTGGAGGAAGAGCTGGGAATCCGCGACGCGGTCCTGCGCGAACATGGCCGCTTCTTCTTCGACGAACCG
GGCAACCGGCTCTGGTGCGCGGTGTTTTCCGCCGTCTCCGATGCGCCCTTGCGTCTGCAGGCGGAGGAAATC
TCCGAAGCCCGCTTCATCCGTCCCGAACTGGCGCTGGAAGAGGCTCGCAGCCTGCCGTACTGCCCCGATTCC
CTGCAGGCGTTGCGCCTGTACCTGGATGCCTGA
Translation:
MAAPISAEEVAHRAASDAELIAWVDEQDRPLGSLPRADLRERGLIGRGTFILLFNSAGELCVQRRTLSKAVY
PGYWDLAAGGMVQAGEPYADSAARELEEELGIRDAVLREHGRFFFDEPGNRLWCAVFSAVSDAPLRLQAEEI
SEARFIRPELALEEARSLPYCPDSLQALRLYLDA*
AnnotationID:4152GeneID:4145
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:14
Gene Name:
Confidence Code:3
GeneProduct:putative isopentenyldiphosphate isomerase
Cell Localization:()
Synonyms:PA4841
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1443,pfam00293
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66192.1|AE016247_2 (AE016776) IPP isomerase type 1 family protein [Pseudomonas putida
           KT2440]
          Length = 177

 Score =  257 bits (656), Expect = 3e-68
 Identities = 129/171 (75%), Positives = 143/171 (83%)

>gb|AAO58269.1| (AE016873) mutT/nudix family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 180

 Score =  253 bits (647), Expect = 3e-67
 Identities = 126/173 (72%), Positives = 142/173 (82%)






 
Structural Features:
COG1443, Idi, Isopentenyldiphosphate isomerase [Lipid metabolism]
CD-Length = 185 residues,  84.3% aligned
Score = 72.6 bits (178), Expect = 3e-14
Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 10/156 (6%)

pfam00293, NUDIX, NUDIX domain.
CD-Length = 133 residues, 100.0% aligned
Score = 60.6 bits (146), Expect = 1e-10
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 7/135 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8292




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25435




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35214




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4145_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4145
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6401
                           PA4841_tr
                           translation of PA4841
                           178
                           99.43
                           99.99
                           0
                           908.0
     

     
     
175483
                           gb|AAG08226.1|AE004897_4
                           (AE004897) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           178
                           99.43
                           99.99
                           0
                           908.0
     

     
     
175484
                           gb|AAN66192.1|AE016247_2
                           (AE016776) IPP isomerase type 1 family protein [Pseudomonas putida KT2440]
                           179
                           73.18
                           81.00
                           3
                           650.0
     

     
     
175485
                           gb|AAO58269.1|
                           (AE016873) mutT/nudix family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           182
                           69.23
                           78.02
                           6
                           644.0
     

     
     
175486
                           gb|AAM85183.1|AE013764_7
                           (AE013764) putative regulator [Yersinia pestis KIM]
                           192
                           38.54
                           52.08
                           24
                           319.0
     

     






      

          
GC ORFID: 47147How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4841Glimmer Score: 

          
Start: 4968984Stop: 4968448

          
Length: 537


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4841 translation of PA4841Homolog Bit Score 354.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5750 (ORF: BLASTX 254.0), t_PA4841 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGCGCCGATCAGCGCCGAAGAGGTGGCCCACCGGGCCGCCTCCGACGCCGAACTCATCGCCTGGGTC 
GACGAGCAGGACCGCCCGCTCGGTAGCCTGCCGCGCGCGGATCTGCGCGAGCGCGGGCTGATCGGTCGCGGC 
ACCTTCATCCTGCTGTTCAACTCCGCCGGCGAGCTGTGCGTGCAGCGCCGGACCCTGAGCAAGGCGGTCTAT 
CCGGGGTACTGGGACCTCGCCGCCGGCGGCATGGTCCAGGCCGGCGAGCCCTACGCCGACTCCGCCGCCCGC 
GAACTGGAGGAAGAGCTGGGAATCCGCGACGCGGTCCTGCGCGAACATGGCCGCTTCTTCTTCGACGAACCG 
GGCAACCGGCTCTGGTGCGCGGTGTTTTCCGCCGTCTCCGATGCGCCCTTGCGTCTGCAGGCGGAGGAAATC 
TCCGAAGCCCGCTTCATCCGTCCCGAACTGGCGCTGGAAGAGGCTCGCAGCCTGCCGTACTGCCCCGATTCC 
CTGCAGGCGTTGCGCCTGTACCTGGATGCCTGA