ViewGene
Locus Name:
GeneID:
Location:

GeneID:4143
TrivialName: PA14_40130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40130
PAO1 Ortholog Locus:PA1885
Sequence Length:534
Protein Length:177
Start: 3578108
Stop: 3577575
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05274.1|AE004614_8 (AE004614) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 177/177 (100%), Positives = 177/177 (100%)
Sequence:
ATGACCGAACCGACGATTCGCCGCCTGGCTGGCGAGGAGATCCTGGCGCGCCTGGACGAACTGGCCGAGGTA
CTGCTGGACTGCGTGGAAGGCGGGGCTTCGGTCAGCTTCATGTGGCCGTTGCCGCGGGAGCGGGCGCTGGCC
TTCTGGCGCGGCGTCGGCGAGAGCGTGGCGGGCGACGAACGCCTGCTGCTGGTGGCGGAAGCGGAGGGGCGG
ATCGTCGGTACCGTGCAACTGCTCCTCGACCAACCGCCGAACCAGCCGCACCGCGCCGACGTGGCGAAGATG
CTGGTGCACCGGCGTGCGCGTCGGCGCGGCATCGGCGAGGCGCTGATGGGCGAGCTGGACCGGCTCGCCCGG
GCCTGCGGCAAGTCCCTGCTGGTGCTGGACACGGTCAGCGGCAGCGCCGCCGAACGGCTGTACCTGAAGACC
GGCTGGACACGGGTCGGGGAAATCCCGGACTACGCCCTGATGCCGGACGGCACGCCCTGTCCCACCACCTAT
TTCTACAAGCGCCTGGCTGCTGCCGGCTGA
Translation:
MTEPTIRRLAGEEILARLDELAEVLLDCVEGGASVSFMWPLPRERALAFWRGVGESVAGDERLLLVAEAEGR
IVGTVQLLLDQPPNQPHRADVAKMLVHRRARRRGIGEALMGELDRLARACGKSLLVLDTVSGSAAERLYLKT
GWTRVGEIPDYALMPDGTPCPTTYFYKRLAAAG*
AnnotationID:4150GeneID:4143
AnnotatorUID: diggins
Modification Date/Time: 2005-06-03 10:10:42
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA1885
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC41709.1| (AL591783) PUTATIVE ACETYLTRANSFERASE PROTEIN [Sinorhizobium
           meliloti]
          Length = 175

 Score =  180 bits (457), Expect = 3e-45
 Identities = 94/174 (54%), Positives = 113/174 (64%)

>gb|AAL41268.1| (AE008997) acetyltransferase [Agrobacterium tumefaciens str. C58
           (U. Washington)]
          Length = 172

 Score =  173 bits (439), Expect = 4e-43
 Identities = 89/169 (52%), Positives = 113/169 (66%)

>emb|CAB71250.1| (AL939129) putative acetyltransferase. [Streptomyces coelicolor
           A3(2)]
          Length = 181

 Score =  138 bits (347), Expect = 2e-32
 Identities = 74/168 (44%), Positives = 97/168 (57%)







 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. 
CD-Length = 82 residues, 100.0% aligned
Score = 54.1 bits (130), Expect = 1e-08
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8288




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25431




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37067




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4143_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4143
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6399
                           PA1885_tr
                           translation of PA1885
                           177
                           99.99
                           99.99
                           0
                           909.0
     

     
     
175471
                           gb|AAG05274.1|AE004614_8
                           (AE004614) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           177
                           99.99
                           99.99
                           0
                           909.0
     

     
     
175472
                           emb|CAC41709.1|
                           (AL591783) PUTATIVE ACETYLTRANSFERASE PROTEIN [Sinorhizobium meliloti]
                           177
                           53.10
                           63.84
                           2
                           457.0
     

     
     
175473
                           gb|AAL41268.1|
                           (AE008997) acetyltransferase [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           177
                           50.28
                           63.84
                           5
                           436.0
     

     
     
175474
                           gb|AAK86062.1|
                           (AE007964) AGR_C_420p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           177
                           50.28
                           63.84
                           5
                           436.0
     

     






      

          
GC ORFID: 47145How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1885Glimmer Score: 

          
Start: 1375802Stop: 1376335

          
Length: 534


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1885 translation of PA1885Homolog Bit Score 354.0

          
Other Homologs:  t_PA1885 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGAACCGACGATTCGCCGCCTGGCTGGCGAGGAGATCCTGGCGCGCCTGGACGAACTGGCCGAGGTA 
CTGCTGGACTGCGTGGAAGGCGGGGCTTCGGTCAGCTTCATGTGGCCGTTGCCGCGGGAGCGGGCGCTGGCC 
TTCTGGCGCGGCGTCGGCGAGAGCGTGGCGGGCGACGAACGCCTGCTGCTGGTGGCGGAAGCGGAGGGGCGG 
ATCGTCGGTACCGTGCAACTGCTCCTCGACCAACCGCCGAACCAGCCGCACCGCGCCGACGTGGCGAAGATG 
CTGGTGCACCGGCGTGCGCGTCGGCGCGGCATCGGCGAGGCGCTGATGGGCGAGCTGGACCGGCTCGCCCGG 
GCCTGCGGCAAGTCCCTGCTGGTGCTGGACACGGTCAGCGGCAGCGCCGCCGAACGGCTGTACCTGAAGACC 
GGCTGGACACGGGTCGGGGAAATCCCGGACTACGCCCTGATGCCGGACGGCACGCCCTGTCCCACCACCTAT 
TTCTACAAGCGCCTGGCTGCTGCCGGCTGA